3300003706: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103008 | Gp0088355 | Ga0008095
• Sample Name: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5107387
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Amazon Forest, Brazil
• Coordinates
  • Lat. (^o): -10.0
  • Long. (^o): -62.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F001758	Metagenome / Metatranscriptome	640	Y
F001975	Metagenome / Metatranscriptome	609	Y
F003427	Metagenome / Metatranscriptome	487	Y
F007695	Metagenome / Metatranscriptome	346	Y
F012439	Metagenome / Metatranscriptome	280	Y
F014312	Metagenome / Metatranscriptome	264	Y
F014482	Metagenome / Metatranscriptome	262	Y
F018438	Metagenome / Metatranscriptome	235	Y
F022151	Metagenome / Metatranscriptome	215	Y
F036030	Metagenome / Metatranscriptome	171	N
F041780	Metagenome / Metatranscriptome	159	Y
F042778	Metatranscriptome	157	Y
F055474	Metagenome / Metatranscriptome	138	Y
F059694	Metagenome / Metatranscriptome	133	Y
F065470	Metagenome / Metatranscriptome	127	Y
F066797	Metagenome / Metatranscriptome	126	Y
F079670	Metagenome / Metatranscriptome	115	N
F081897	Metagenome / Metatranscriptome	114	Y
F085747	Metagenome / Metatranscriptome	111	N
F100618	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008095_100015	Not Available	501
Ga0008095_100073	Not Available	523
Ga0008095_100145	Not Available	580
Ga0008095_100430	Not Available	1156
Ga0008095_101038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	689
Ga0008095_101235	Not Available	673
Ga0008095_102096	Not Available	585
Ga0008095_102324	Not Available	505
Ga0008095_103143	Not Available	633
Ga0008095_103229	Not Available	621
Ga0008095_103898	Not Available	677
Ga0008095_104735	Not Available	587
Ga0008095_105539	Not Available	512
Ga0008095_105761	Not Available	738
Ga0008095_106244	Not Available	555
Ga0008095_106357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	541
Ga0008095_106636	Not Available	783
Ga0008095_106775	All Organisms → cellular organisms → Bacteria	695
Ga0008095_107647	All Organisms → cellular organisms → Bacteria	607
Ga0008095_108832	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008095_100015	Ga0008095_1000151	F014312	TAIETNKGTANGVVRLWERVKAERFAVTMTPLVGAERLARKTERFSERPDKNG*
Ga0008095_100073	Ga0008095_1000731	F055474	MPFRIVAFSRFSLPEAQPFETPDSPSLPVARPHFKNDDRRGSTFQVRYVPPGSLLP
Ga0008095_100145	Ga0008095_1001451	F085747	FQVICLTAKLSAGIRGTELREQNRRTVSGLLPGAPFQAHRINAPRAVCWPDSVRSRRLVTAFHSLGTTARFQATIPRSKLPACYFNALPNRSSGPFDRLLLRPNRFAPGPVGLTACGPFPGLRPDTSESASNLHSPLGALTPAGSKRSIRFGSGKLTFRLRPIVLRSPQPFYCVVPAADHRSELATFPEARCS
Ga0008095_100430	Ga0008095_1004302	F066797	LNSHQIISSADLGGSSNYSKETNNSKCSTLKTEVAKVFLTTEIAQELVDPNPKDYEK*
Ga0008095_100749	Ga0008095_1007491	F000203	MGVRHALFPMPALGALQAASFPTLFSAANGVVGLVAGPSSASPSLDY*
Ga0008095_100980	Ga0008095_1009802	F000203	PVPALGASGAAGFPTLFSTASGVSGLVAGPSSASPPLDFE*
Ga0008095_101038	Ga0008095_1010381	F001975	KTMASTTTSTQQDLQDQFLSIVSKSQEMALDAIKSMVDTVQTITPKIPAVDVPFADRLPKPQDVVANGYDFAQKLLSSQRKFADEVVKATAPLLPGNGDSK*
Ga0008095_101235	Ga0008095_1012351	F001758	VTGERLSQAGWLIPSKAGSQGSGEEAEFTSSSGDVRASSVNAKKGLSXEGR*
Ga0008095_102096	Ga0008095_1020961	F012439	SSLIAASTSGVHHSAGNPDPAVTFRPRRFSRPRRFPPPPAFAGLFHPAATSRVCPSGVCPSPRSRTGFPRPIHALLALNADTCDQRPRPRLQGFAPRRECGVGRGGLGPDRSAPLVGFSSSGCSLRATWECLHIPSALDLRRQEPLTVGHRRLGAARIGLPGIRLPTRSSFLA*
Ga0008095_102324	Ga0008095_1023241	F014482	DFQPGSLPACTAWSTCKQKRRAIRLSAPRKLGFPRPRLNASWLAACFLLSGTGXLVTAFRSPATTALARRHPFRGQCSQPATSRSPESLPCPVHPWLRYRASGLLRWRPLPRSGPVALPLPGSACRIAYPPLPSGIFASLGIKAFSYACCLPGSPDESARFPLAPRC
Ga0008095_103143	Ga0008095_1031432	F081897	WEFAMLSFPCWHLAHPQGGAVSFPTLFSMANGVTGLVAGPSSALQQLDY*
Ga0008095_103229	Ga0008095_1032292	F007695	MKGNLRVKRRDPWHGANAPSKTVADLTLSGEDADQQSQRVFAWFADRWRNHQPKQAEKPHSKFSRREALNGPATRPITPLAVENSVGKLAALQCGAPNASTGKRAWRTPI
Ga0008095_103898	Ga0008095_1038981	F079670	VKRTLKKGLKVLEMVKRERNKIITIDNSLKLFSILYFFFKKKYKFDLI*
Ga0008095_104735	Ga0008095_1047351	F059694	MEFAKARAVAGEEKAVASERFRFGEKAKAAGRLKAMKRKPEKPASGEQRDEAYGAPERGVRYGACPWRARLGIGSLG
Ga0008095_105539	Ga0008095_1055391	F022151	NGTERVWNIDPLLVLLKTAGSGERKAIGRFDSVSLSAGIRVSALIAKGQKALNGSEDSRNGRGREEGTGQRV*
Ga0008095_105761	Ga0008095_1057612	F065470	MSKGCGATVGDTSGDNPDPESVRRKHGQAARKGGRERGRGNEDTRSLTRRDTGDRSTATLVPKQRQIAHW
Ga0008095_106244	Ga0008095_1062441	F041780	PLVAACSPTGMHGLNMAFRMTGPIFLCSPRSPFGKSASTLRTRPASHSNRNRHLETAFVLPCSDFPYPELRGRLKRSQPASSITLLGPIQSRSVPNSLPAAFGVRRGHGHETRFLLAARQSRPILEPPLPFGVSPPPDHCAQSDSDREVYLSRMPDFPLLPERLLVANLTLGSTFQVRYILPGFT
Ga0008095_106357	Ga0008095_1063571	F042778	K*SSVQPHSPPACTVLSVAIRSAGRFVCLLPANRFRRSTDRRFQARRSDSRSGPDARDGLSLARNNFRCHGRHSRVKTPGLPLRF*TCRILCPFGPSAPLPEPVSPGIRPHLCFWPVAEFATGSTRVSTGLHSPSGVLPPSGSKRSTGISACQPTFRTRPIAVRSPQPFSISRVSAVDHR
Ga0008095_106636	Ga0008095_1066362	F003427	MVKTRSSNHKRVFTWFASWRLQASVEASLEASLEILLPQGAGQPCYEAELTPPAPENSVGKPAANVRLMPAWERER
Ga0008095_106775	Ga0008095_1067752	F036030	MSQPIETQIGEIRQYLEWEFPGQVRNAWWDEDIKAPVFEVIYETGCHHVIVDTGFIQACQDAAASLRASELADYMREARTQARRFLILEESGEVHIRSTPL*
Ga0008095_107647	Ga0008095_1076472	F018438	MGIDDESSHPKLCSEVADGVTRTIVCLFREPDAGNPPVRFDEREQETESSQTGLRRRYESFVSSHRETK
Ga0008095_108832	Ga0008095_1088321	F100618	PAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLVNANRARFVGSRKRLAIVDA*