3300007263: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ17 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300007263
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124992 | Ga0101451
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ17 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87976032
• Sequencing Scaffolds: 24
• Novel Protein Genes: 33
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV	1
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F002682	Metagenome / Metatranscriptome	537	Y
F002915	Metagenome / Metatranscriptome	521	Y
F004603	Metagenome	431	Y
F007139	Metagenome / Metatranscriptome	357	Y
F007266	Metagenome / Metatranscriptome	354	Y
F008525	Metagenome / Metatranscriptome	332	Y
F019114	Metagenome	231	Y
F023756	Metagenome / Metatranscriptome	209	Y
F028183	Metagenome / Metatranscriptome	192	N
F032291	Metagenome / Metatranscriptome	180	Y
F036688	Metagenome / Metatranscriptome	169	N
F037681	Metagenome / Metatranscriptome	167	N
F040846	Metagenome / Metatranscriptome	161	N
F040851	Metagenome / Metatranscriptome	161	N
F049683	Metagenome / Metatranscriptome	146	N
F052547	Metagenome / Metatranscriptome	142	N
F056057	Metagenome / Metatranscriptome	138	N
F058202	Metagenome / Metatranscriptome	135	Y
F060422	Metagenome	133	N
F066701	Metagenome / Metatranscriptome	126	Y
F067707	Metagenome / Metatranscriptome	125	N
F073533	Metagenome / Metatranscriptome	120	N
F077304	Metagenome / Metatranscriptome	117	N
F078834	Metagenome	116	N
F080082	Metagenome / Metatranscriptome	115	N
F082267	Metagenome / Metatranscriptome	113	Y
F082635	Metagenome / Metatranscriptome	113	N
F082707	Metagenome	113	N
F083229	Metagenome / Metatranscriptome	113	Y
F084269	Metagenome / Metatranscriptome	112	N
F093745	Metagenome	106	N
F099122	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101451_100927	All Organisms → cellular organisms → Bacteria	9160
Ga0101451_102782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5983
Ga0101451_103033	All Organisms → cellular organisms → Bacteria	5598
Ga0101451_103626	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV	3845
Ga0101451_104377	All Organisms → Viruses → Predicted Viral	4685
Ga0101451_104397	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2436
Ga0101451_104755	All Organisms → cellular organisms → Bacteria	5638
Ga0101451_105063	Not Available	2915
Ga0101451_106132	All Organisms → Viruses → Predicted Viral	4220
Ga0101451_106467	Not Available	5099
Ga0101451_107639	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	2964
Ga0101451_107640	All Organisms → cellular organisms → Bacteria → Proteobacteria	2822
Ga0101451_107970	All Organisms → Viruses	2642
Ga0101451_108460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	5269
Ga0101451_108490	Not Available	7917
Ga0101451_109150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	4942
Ga0101451_109739	All Organisms → Viruses → Predicted Viral	2968
Ga0101451_109750	All Organisms → Viruses	2548
Ga0101451_111338	All Organisms → Viruses → Predicted Viral	3673
Ga0101451_111465	All Organisms → Viruses → Predicted Viral	2228
Ga0101451_111859	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2280
Ga0101451_113100	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	8399
Ga0101451_114281	Not Available	2714
Ga0101451_115424	All Organisms → Viruses → Predicted Viral	2703

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101451_100324	Ga0101451_10032415	F093745	MHLSKNKKTSFILNTLGIDMLSISEKLDNSVQTYVHCSLRDRILTLHSHSLDEYSERELELLSKIEASVSKESKKNRILELTWDDFLNNHELLNIEIILNFTNIKID
Ga0101451_100927	Ga0101451_10092712	F073533	IKRVPDIDFKIVLDVDKYLDGELDDWYKKLKLFVNGSVQFRRNYYKGVFDRISYNELCQKAYDDFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLEQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVAIKEYMYATH*
Ga0101451_100927	Ga0101451_1009278	F077304	LTNFDFTKVLLEKKRPNIGEIELTLFENCHLNCAFCHHDKKSTVGLSREGMFSKIPLVEDHLKKMQGMVKTCQINMVGGELFQDRISDWAYDVYYDMLIEIKKLYDKYEQEIKVVWVTSFQFSKRDKVQKLLDDLNEADIPSYIICSYDFDGRPVRGPYGKNIEYFADYITSINMVATVPSIERFMKDDDEYFHYLYSKFDNFYFDDYIPDKGFDHLIPSDSLYLDFLTFIFHNYPDINPISDLIKNENNHMHCMALNKVTIFPNNSISNCRWDRYTKSDFNTPLNRQDNASMMQAYMDEHGCLSCKWWDKCGFRCYTQWDWKNRERDLPDCVMRMWFNYMDRIKSGKTQLVSA*
Ga0101451_100927	Ga0101451_1009279	F052547	MGIATDNKSHAQADKDFDLSFSEGHEIKVQFNCEILSGCEFKCKGCFVNKLGSNVGDFQRLNDAIDLFNENGYRVSTINIGPTDIFGNNNVLELLQDEIFRECLSKVTTIQFVTTLSEQIDLRVIDLLNSIPKKEGFMYDCNVVVEHPIVWGSLQSRLNMLNLFEDDLNYYFVYNMGNDDEDNEKVLDLSKVTDRYFDTILQLNPSFFRAPKSKVQKHMIEKWKSYDFSHDMYPXDQAQGGSLELNFTYCNERFFWTPFVYDIVMIGTDEFEVKEEWNINSWTKVKEDQFLNQLEYTAETEQCAMCPKQMTCIDKGVISYMKHHALTSCVFPDFIRSM*
Ga0101451_102782	Ga0101451_1027826	F082267	MDFYDEGSSWQIITFTVLTLGALIFQIGTKFDQWKNPEKYEFDWKAGLEEE*
Ga0101451_103033	Ga0101451_1030331	F082707	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKP
Ga0101451_103033	Ga0101451_1030333	F028183	LEETRSAPYCRELKTLWYDREYLLDHLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNDITNEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFV*
Ga0101451_103626	Ga0101451_1036263	F067707	MTFLQNTSILLPVVFFTLYSGVKISQTNFYPGIDNLLNQNTLYGIIIMMHAMFGISPVSELPERTKAVASSVWFKLISLLIISFSATRDFEDAVLVLITFLGIVQLLRTKEERKKYPYIIV*
Ga0101451_104377	Ga0101451_1043773	F023756	MINPEFDHDWNDVSVFEKLPVRKTANPKRDDWKRDRKAARNAKRKMQEQSHA*
Ga0101451_104397	Ga0101451_1043971	F040846	MERFGPAFFMRPAYCVDCNKKPIKIKDADIQGGSVGMNVEDHICPECYWVMNTSSWERFRAGFLDGTFTVEEFENWERKTYMNGTFVSETLNQNS*
Ga0101451_104755	Ga0101451_1047558	F084269	MFRLKNKKQRENSLIVMRAISRIKKYEMNENSSYGLHNPLLREQAN*
Ga0101451_105063	Ga0101451_1050633	F083229	MAGCDKLNYDLDWNQIPVDHILKNMTPMTDTLNGAFGDFAKRYEDLGSDKKEQAKLFDNWYVLREQHLHRTKDLGEFDPRGYIENTAKNIAKPLKPFVRFYLLKAGQELKPHIDFATKSCMNFVYNKRFASIVVEGKPYPYGSFLLDNTKMHGIPACDEDRFIFSFSFFESYDEVRRRCGILEESS*
Ga0101451_106132	Ga0101451_1061323	F007139	MITTGTAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKALEAEGVKVRTIQTEDGGSYKARKFSTRYPLSFDMVKTADGEAIGHDFGAESEVQVLWKKGNEHPQHGFATYLTAVKVMKRTEGYKSADEETNAFFA*
Ga0101451_106467	Ga0101451_1064673	F007266	MENTKPISDNSAMTISLPMIIQAVTFIVMLVWGYSQLNARISFLEYQVAMNEEHIIDLEEDAEKNQDAGIPADIKQNQRIEYLEREVDRLRN*
Ga0101451_107639	Ga0101451_1076392	F049683	MLLVNNVFIIFLLKFACESTMYLIKKEELSGTALWLKENFEAIFLWFCVICIVVSALFILKLYLNRQK*
Ga0101451_107640	Ga0101451_1076403	F080082	MRGKYSLYYDWIMEVGEERLVEQKFLKENFYSREDYTVFLFILLRFSKKLSSEIRDSTANKSDNKFIKSTFPNPKITGDELDEFIMQYYEKVKNLKHYGTTRRAISQQTNIPRTSVKRILDRLMKRKLVTVTKNDNLIVPTALARKKFSDYRKYLFTSFKRLNKIFNDSHLEYLNPNDPGL*
Ga0101451_107970	Ga0101451_1079702	F036688	MLEEELDDLTKRRLELDEIISDLYELKPLLEKCENDTLLKRYGKCESSTFSLSEWYIRTKPLLKDMVSWLKMYYEQKIEAHDNTENLKQKIKKLRHEVLASFNKS*
Ga0101451_108460	Ga0101451_1084601	F066701	MIRLNDTYAGYYTYDKDHSPSNVDFLRTEINLDILHGCDQMCPGCFIPRKNLTNADHLKDLYELLVNGCYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVIKSKLEKIWSLYAHIKRIPDIDFKIVLDVDKYLDGELDDWYKKLKLF
Ga0101451_108490	Ga0101451_1084903	F040851	MQFQLVIGKKCQIKWKIQDGMDKWAEEVKNYRNWFSLVKVNCIRLDTGEVLIGWVKKLWNGDYRIEDAHICISEVKDGNMETNMAPWIPFAKEYTFTIKKGLIQTVFEPKPQLETNFKIATGNNSIRGQVRK*
Ga0101451_108856	Ga0101451_10885612	F032291	VIAVGVPLIAPVELSNERPDGSDGETDHDVTVPPLDVGVTVVIAVPLVNVNEFGVYVIEDGATSFTWIVMVVVPLPPGLVAVTV*
Ga0101451_108916	Ga0101451_10891617	F082635	MKSIFNLVCLAIVILASHYASANQNEFKINAEIIDYDPSKKIISLDGAISMTSDDFQISGITATISMNEEVISIEGNPARINLENPEKIFGEAKQIKYTPAKEISLVGEAVLRT
Ga0101451_109150	Ga0101451_1091501	F002915	GLMKKLLLLLIIPMLGLSKEVFINEQGVKIEYTKPSVSCIYDKEAYEGYLNTCLIVPNKEICAQTKYEMYICSNKNEIKKLEKKSKXXXXXXXXXXXXXXXXY*
Ga0101451_109739	Ga0101451_1097393	F099122	MTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGTAITYANKDILTEEDFNEV*
Ga0101451_109739	Ga0101451_1097396	F037681	MTQEELTVKREDLYKSWGYDIENLPFGAHMWLAPEKETRQNPYSGVKVLLNPVELAIYDHLMQSYHDHIELGTGGDLVEARKLYQDFKKGKEWFIENNIRAYMDLID*
Ga0101451_109750	Ga0101451_1097503	F058202	MKSLRQIVELKKIDIIPDPEFQAGVRADYANPKSDGERNFVGKHLDNIQKTLHPAFKNEAEQDAVFKGGSVNKDHSKKASYKDDMDVEVYEAAIHFVQDNLTEENLVAFNSLLEELYDTALQFAMEVAEELEAEE*
Ga0101451_111338	Ga0101451_1113382	F002682	MGKQIGSEEKPFTFRSPIYKNSHGSKGANPRPGFYTQDYRDNWDRIFGKKKKAEENKD*
Ga0101451_111465	Ga0101451_1114653	F008525	MLTFKESFNEVLEAKLKLGGGEKVVKQMKNLGKKKNVEAVITQQKAGSKKFNLYIDGLKLDSYKDQASAEKAVTEFIKLMGA*
Ga0101451_111859	Ga0101451_1118591	F060422	IAGARVGKFERATADTDWETLANLTGDIAALKRTAQTLNNRLNGMNKAVVPQDQIIQQMIEHQNVEQIRRGG*
Ga0101451_113100	Ga0101451_11310010	F019114	MKHLKGRMEVARDEFYRNRRNRGFMSFWWSDXLHYVLGLEVAIADVSGKSINFEAIVKLLPSSMGSRSTIATVLDDFVARGYMCKTVGKDKRKRVYRICREPMQLLDNWFIERQRSLKAVS*
Ga0101451_113100	Ga0101451_11310014	F004603	MIFSININGSIVDWCYTINNQEKQYHQTWIPKLKDIQIITKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARRQKNV*
Ga0101451_113100	Ga0101451_11310015	F002399	MNLRKSHKSVIGQLRKKYGLKDNTPIHKVEQIMTPEDWKTFSEALTFPNGKPTQRGK*
Ga0101451_114281	Ga0101451_1142812	F078834	VNGLLTAFLWFIALVCLALPAWLLYNSWNKGRLLNERLENCDDGLLTDSGVKVIQVMSAPLGTTVTENATLVAVPSNSNQII*
Ga0101451_115424	Ga0101451_1154243	F056057	MTQSGRQEIIKRLAEDYAERAAVLSMKFDEAYTRYVKRCERRTDENLLQQFTCANLGRVPVTTTAGRSDEYIITTGPDDCEDGVCKL*