3300026706: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054290 | Ga0207925
• Sample Name: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9556115
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Gorham, Kansas, USA
• Coordinates
  • Lat. (^o): 39.05
  • Long. (^o): -99.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008776	Metagenome	328	Y
F025135	Metagenome / Metatranscriptome	203	Y
F029894	Metagenome / Metatranscriptome	187	Y
F069793	Metagenome / Metatranscriptome	123	Y
F093450	Metagenome	106	Y
F098847	Metagenome / Metatranscriptome	103	Y
F105488	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207925_100343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753
Ga0207925_100895	Not Available	577
Ga0207925_100896	Not Available	577
Ga0207925_101002	Not Available	561
Ga0207925_101270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207925_100343	Ga0207925_1003432	F098847	RRWTLGGIVLGTLELGLGALLLLTREVNPGLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG
Ga0207925_100496	Ga0207925_1004962	F105488	VIIASRLFMAMGLFGLVAGAIYYLAADNPELAGVGLLGAFFAACLYIGIMLWTASPANRRRVPVPDTGLAGSADPKRGAADERGNIHHMAPTWAPVVYSLAATFLLGGFILRKQIAALGPWGIGLGLALFLGATIIWYRNVAVDQRARLAPHGGPTGAEHGVAVH
Ga0207925_100895	Ga0207925_1008952	F029894	MMRGQVVAEEAQAWTAGLLLATDYFAHARREAVAKASAAILGRLHRSREATTEDRGTSR
Ga0207925_100896	Ga0207925_1008962	F093450	MTHCLRSLPTAMCVRAQTSALGIAIRFKPSEKGKQARESKVEITNTLYAEKDQQPQLSLLEFQAADGSFRQPTEAEVSILTFCKLRYARSRAQELSNEFARLLNRGSSLE
Ga0207925_101002	Ga0207925_1010021	F025135	MPAQVALTEAEARAFSSLLRRASDRLETYEEQTHQDRRLAEEIRIAADELVSRLRPDQEATA
Ga0207925_101162	Ga0207925_1011621	F069793	PPVLVIATGVGIAVSQLLFEAQPVKRLFNVPQYILSVAVAAASAALLVDLLQRYDLFGGELETGVFRPALAVVWVLAMAAFFIVNHSLVSTVVSLSTGQGFVQSWLRAAPVAAADWAASIAYGLIIAALLVHDQALLPLLVVPIGLTFLGNRAWARSLAQGQRMHSLYAAGRALSNRLG
Ga0207925_101270	Ga0207925_1012702	F008776	MKIYLEDEETLEDDVNYGIADCRKRLRSRRSTLRAQHHPPKECSNGEVSPAAGRVGSYAEVLAVSMSQSSLSRLVECLLEPASTNTPSQEESKEREEAGI