Metagenome Family F098162

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098162
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	48 residues
Representative Sequence	MASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSPT
Number of Associated Samples	8
Number of Associated Scaffolds	96

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	38.46 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	5
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (92.308 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave (97.115 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.42% β-sheet: 0.00% Coil/Unstructured: 81.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 96 Family Scaffolds
PF00665	rve	2.08
PF13456	RVT_3	1.04

COG ID	Name	Functional Category	% Frequency in 96 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	2.08
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	2.08
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	2.08
COG4584	Transposase	Mobilome: prophages, transposons [X]	2.08

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
All Organisms	root	All Organisms	7.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
cellular organisms	root	All Organisms → cellular organisms	7.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	5.77 %
Hyphomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5.77 %
Hyphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	5.77 %
Hyphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Asparagales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Asparagaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Asparagoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Asparagus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Asparagus officinalis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	5.77 %
Hyphomonas johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003849\|Ga0058690_102266	Not Available	885	Open in IMG/M
3300003849\|Ga0058690_102788	Not Available	816	Open in IMG/M
3300005562\|Ga0058697_10259488	Not Available	813	Open in IMG/M
3300005562\|Ga0058697_10267167	Not Available	803	Open in IMG/M
3300005562\|Ga0058697_10285832	Not Available	781	Open in IMG/M
3300005562\|Ga0058697_10287366	Not Available	779	Open in IMG/M
3300005562\|Ga0058697_10287366	Not Available	779	Open in IMG/M
3300005562\|Ga0058697_10349413	Not Available	719	Open in IMG/M
3300005562\|Ga0058697_10420802	Not Available	666	Open in IMG/M
3300005562\|Ga0058697_10523712	Not Available	609	Open in IMG/M
3300005562\|Ga0058697_10523712	Not Available	609	Open in IMG/M
3300005562\|Ga0058697_10554038	Not Available	594	Open in IMG/M
3300005562\|Ga0058697_10572332	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	586	Open in IMG/M
3300005562\|Ga0058697_10596196	Not Available	576	Open in IMG/M
3300005562\|Ga0058697_10621445	Not Available	566	Open in IMG/M
3300005562\|Ga0058697_10701053	Not Available	539	Open in IMG/M
3300005562\|Ga0058697_10717353	Not Available	533	Open in IMG/M
3300005562\|Ga0058697_10793146	Not Available	511	Open in IMG/M
3300005562\|Ga0058697_10793233	Not Available	511	Open in IMG/M
3300005562\|Ga0058697_10793236	Not Available	511	Open in IMG/M
3300005562\|Ga0058697_10796737	Not Available	510	Open in IMG/M
3300005562\|Ga0058697_10796737	Not Available	510	Open in IMG/M
3300005562\|Ga0058697_10804521	Not Available	508	Open in IMG/M
3300005562\|Ga0058697_10831603	Not Available	501	Open in IMG/M
3300005661\|Ga0058698_10012581	Not Available	3619	Open in IMG/M
3300005661\|Ga0058698_10022971	Not Available	2826	Open in IMG/M
3300005661\|Ga0058698_10093805	Not Available	1588	Open in IMG/M
3300005661\|Ga0058698_10137782	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300005661\|Ga0058698_10185513	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	1186	Open in IMG/M
3300005661\|Ga0058698_10204132	Not Available	1137	Open in IMG/M
3300005661\|Ga0058698_10271928	Not Available	999	Open in IMG/M
3300005661\|Ga0058698_10276187	Not Available	992	Open in IMG/M
3300005661\|Ga0058698_10303027	Not Available	950	Open in IMG/M
3300005661\|Ga0058698_10318670	Not Available	928	Open in IMG/M
3300005661\|Ga0058698_10318670	Not Available	928	Open in IMG/M
3300005661\|Ga0058698_10336097	Not Available	905	Open in IMG/M
3300005661\|Ga0058698_10364629	Not Available	871	Open in IMG/M
3300005661\|Ga0058698_10366318	Not Available	869	Open in IMG/M
3300005661\|Ga0058698_10464396	Not Available	775	Open in IMG/M
3300005661\|Ga0058698_10484868	Not Available	759	Open in IMG/M
3300005661\|Ga0058698_10512010	Not Available	739	Open in IMG/M
3300005661\|Ga0058698_10527962	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	728	Open in IMG/M
3300005661\|Ga0058698_10561809	Not Available	706	Open in IMG/M
3300005661\|Ga0058698_10583293	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	693	Open in IMG/M
3300005661\|Ga0058698_10600686	Not Available	683	Open in IMG/M
3300005661\|Ga0058698_10600686	Not Available	683	Open in IMG/M
3300005661\|Ga0058698_10603976	Not Available	681	Open in IMG/M
3300005661\|Ga0058698_10625743	Not Available	669	Open in IMG/M
3300005661\|Ga0058698_10629644	Not Available	667	Open in IMG/M
3300005661\|Ga0058698_10647069	Not Available	658	Open in IMG/M
3300005661\|Ga0058698_10656717	Not Available	653	Open in IMG/M
3300005661\|Ga0058698_10724952	Not Available	621	Open in IMG/M
3300005661\|Ga0058698_10746220	Not Available	612	Open in IMG/M
3300005661\|Ga0058698_10746220	Not Available	612	Open in IMG/M
3300005661\|Ga0058698_10748670	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	611	Open in IMG/M
3300005661\|Ga0058698_10792573	Not Available	593	Open in IMG/M
3300005661\|Ga0058698_10811304	Not Available	586	Open in IMG/M
3300005661\|Ga0058698_10822791	Not Available	582	Open in IMG/M
3300005661\|Ga0058698_10825426	Not Available	581	Open in IMG/M
3300005661\|Ga0058698_10836524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas johnsonii	577	Open in IMG/M
3300005661\|Ga0058698_10920042	Not Available	549	Open in IMG/M
3300005661\|Ga0058698_10942309	Not Available	543	Open in IMG/M
3300005661\|Ga0058698_10942309	Not Available	543	Open in IMG/M
3300005661\|Ga0058698_10959437	Not Available	537	Open in IMG/M
3300005661\|Ga0058698_10980292	Not Available	531	Open in IMG/M
3300005661\|Ga0058698_10980442	Not Available	531	Open in IMG/M
3300005661\|Ga0058698_10983916	Not Available	530	Open in IMG/M
3300005661\|Ga0058698_10988081	Not Available	529	Open in IMG/M
3300005661\|Ga0058698_10994442	Not Available	528	Open in IMG/M
3300005661\|Ga0058698_10994442	Not Available	528	Open in IMG/M
3300005661\|Ga0058698_11047681	Not Available	513	Open in IMG/M
3300005661\|Ga0058698_11055735	Not Available	511	Open in IMG/M
3300005661\|Ga0058698_11067556	Not Available	508	Open in IMG/M
3300005661\|Ga0058698_11071488	Not Available	507	Open in IMG/M
3300005661\|Ga0058698_11092390	Not Available	502	Open in IMG/M
3300006021\|Ga0058700_1012511	Not Available	575	Open in IMG/M
3300030502\|Ga0268258_10126362	Not Available	595	Open in IMG/M
3300030504\|Ga0268249_1022063	Not Available	778	Open in IMG/M
3300030692\|Ga0268250_10071359	Not Available	1412	Open in IMG/M
3300030692\|Ga0268250_10140345	Not Available	1079	Open in IMG/M
3300030692\|Ga0268250_10304172	Not Available	789	Open in IMG/M
3300030692\|Ga0268250_10393907	Not Available	708	Open in IMG/M
3300030692\|Ga0268250_10402831	Not Available	701	Open in IMG/M
3300030692\|Ga0268250_10404176	Not Available	700	Open in IMG/M
3300030692\|Ga0268250_10446946	Not Available	671	Open in IMG/M
3300030692\|Ga0268250_10463064	Not Available	661	Open in IMG/M
3300030692\|Ga0268250_10477841	Not Available	652	Open in IMG/M
3300030692\|Ga0268250_10494370	Not Available	643	Open in IMG/M
3300030692\|Ga0268250_10542908	Not Available	617	Open in IMG/M
3300030692\|Ga0268250_10591570	Not Available	594	Open in IMG/M
3300030692\|Ga0268250_10623643	Not Available	580	Open in IMG/M
3300030692\|Ga0268250_10652897	Not Available	568	Open in IMG/M
3300030692\|Ga0268250_10711346	Not Available	547	Open in IMG/M
3300030692\|Ga0268250_10733277	Not Available	539	Open in IMG/M
3300030692\|Ga0268250_10747998	Not Available	534	Open in IMG/M
3300030692\|Ga0268250_10794754	Not Available	520	Open in IMG/M
3300030692\|Ga0268250_10835348	Not Available	508	Open in IMG/M
3300032159\|Ga0268251_10213513	Not Available	762	Open in IMG/M
3300032159\|Ga0268251_10263580	Not Available	701	Open in IMG/M
3300032159\|Ga0268251_10274428	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	690	Open in IMG/M
3300032159\|Ga0268251_10332274	Not Available	639	Open in IMG/M
3300032159\|Ga0268251_10617890	Not Available	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Phylloplane	Host-Associated → Plants → Phylloplane	97.12%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	97.12%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	2.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	97.12%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	2.88%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	97.12%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	2.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003849	Agave microbial communities from Guanajuato, Mexico - As.Sf.rz	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005661	Agave microbial communities from Guanajuato, Mexico - As.Sf.e	Host-Associated	Open in IMG/M
3300006021	Agave microbial communities from Guanajuato, Mexico - At.Am.e	Host-Associated	Open in IMG/M
3300030502	Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (v2)	Host-Associated	Open in IMG/M
3300030504	Agave microbial communities from Guanajuato, Mexico - At.P.e (v2)	Host-Associated	Open in IMG/M
3300030692	Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058690_1022662	3300003849	Agave	MASPTQTVVGKGMSNPLTAEDLLKILRDTFPFDPTPPTAKDRGKCWLLSPT*
Ga0058690_1027882	3300003849	Agave	MASPTQTVVGKGMSNPLIAEGLLKILRDTFPFDPTPPTAKDRGKCWLLSPTSVFDNSSC*
Ga0058697_102594881	3300005562	Agave	HKSSTTHHAEGNSMASPTQTVVGKGVPNLLTAEDLLKILRDLFPFDSAVKDRGKYWPLRPT*
Ga0058697_102671672	3300005562	Agave	MASPTQMVVGKGISNPLIAEDLLKILRDLFSFDSPAKDRGKC
Ga0058697_102858322	3300005562	Agave	MASPTQTAVGKGISNPLKAEDLLKILGDLFPFDSVVKDRGKCWRLSPT*
Ga0058697_102873662	3300005562	Agave	MARPTQTIDGKGISNPLKAEDLLKILRDLFPFDSRVKDRGKC*
Ga0058697_102873663	3300005562	Agave	MASPTQAVVGKGISNPLTSEDLLKILRDLFQFDSAVKDRGKYWPLSPT*
Ga0058697_103494132	3300005562	Agave	MASPTKTVVGKGIPNPLTAEDLLKILRDLSPFDSAVKDRGKCWLLSPT*
Ga0058697_104208021	3300005562	Agave	TTHHAEENSMASPTQTVVGKGIPNPLTAEDLLKILRDMFPFDPAVKDRGKRWPLSPT*
Ga0058697_105237121	3300005562	Agave	MASLTQTVVGKSIPNPLTAENLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058697_105237122	3300005562	Agave	MTSPTQTVVGKGIPNSLTAEDLLKILRDLFPLDSTVKDRRKCWPVSPI*
Ga0058697_105540382	3300005562	Agave	MASPTQTVVGKGISNPLTAEDLLKILRDLFSFYPTPLTVKDKGKCWPLSPT*
Ga0058697_105723321	3300005562	Agave	MASPTQTVVGKGISNPLIAKDLLKILRDPFPFDPTPLTVKDRGKCWPLSPT*
Ga0058697_105961961	3300005562	Agave	MASPTQTVVGKGISNPLTAEDLLKILRDMFPFHPTPPMAKDRGKSWLLSPT*
Ga0058697_106161943	3300005562	Agave	MNMLAFKPNIKSSTTHHAEGNSMASPTQMVVGKGIPNPLTAEDLLKILRDLFPFDSVVKDRGKCWPLSPT*
Ga0058697_106214452	3300005562	Agave	MASPTQTVVGKDIPNLLTAEDLLKILSDLFLFGSVVKDREKCWPLSPT*
Ga0058697_107010532	3300005562	Agave	MASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDPAVKNRGKCWPLSPT*
Ga0058697_107173531	3300005562	Agave	GKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058697_107931462	3300005562	Agave	MASLTQTVVGKGIPNPLTAEDLLKILRDLFPFDSVVKDRGKCWPLSPT
Ga0058697_107932332	3300005562	Agave	MASPTQTVVGKGIPNLLTAEDLLKILKDLFPFNSAVKDRRKC*
Ga0058697_107932361	3300005562	Agave	MASPTHTVVGKGVPNPLTAKNLLKILRDLSPFDFAVKDRGKCWPLSPT*
Ga0058697_107967372	3300005562	Agave	MTSLTQTVVGKGILNPLTAEDLLKILRDLLLFDSAAKDRGKRWP*
Ga0058697_107967373	3300005562	Agave	GNSMASPTQMVVDKGIPNQLTAEDLLKILRDLFSFNSAAKDRGQCWP*
Ga0058697_108045211	3300005562	Agave	MVVSKGISNPLTAEDLLKILRDLFPFDSAVKDRGKYWPLSPTEVLDNSSC*
Ga0058697_108316032	3300005562	Agave	MASLTQTVADKGISNPLTAEDLLKILRDLFLFDSTVKGRGKCWPLSPT*
Ga0058698_100125816	3300005661	Agave	MASPTQTIVGKGMSNPLTAEDLLKILRDLFPLIDRGKCWPLSPTQVLDNSSC*
Ga0058698_100229714	3300005661	Agave	MASPTQTVVSKGISNPLTVEDLLKILRDLFLFDSAVKDRGKYWPLSPT*
Ga0058698_100938052	3300005661	Agave	MASPTQTVVGKGIPNPLTAENLLKILRDLFPFDSAVKDIGKCWPLSPT*
Ga0058698_101377823	3300005661	Agave	MASPTQTVVGKGVPNPLTAEDLLRILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058698_101855132	3300005661	Agave	MASQTQTVVGKGIPNLLTAEDLLKILKDLFPFNSAVKDRRKC*
Ga0058698_102041321	3300005661	Agave	HAEGNSMASLTQTVVGKGISNPLTAEDLLKILRDLIPFDFAAKDRGKC*
Ga0058698_102719281	3300005661	Agave	MASSTQTVVGKDIPNPLTTEDLLKILRDLFPFDSAVKDRKNCWPLSPT*
Ga0058698_102761872	3300005661	Agave	MASPTQTVVGKGIPNPLTAKDLLKILRDLFPFDSVVKGRGKCWPLSPT*
Ga0058698_103030272	3300005661	Agave	MASPTQTVGKGIANPLTAEDSLKISRDMFPFDFAVKDRGKCWPLSPT*
Ga0058698_103186703	3300005661	Agave	MASPTQMVVGKGVPNSLTAENLLKILRDLFPFDSAVKDRGKC*
Ga0058698_103186704	3300005661	Agave	TQTVVDKGISNPLTAEDLLKILRDLSPFDSTVKDRGKCWPLSPT*
Ga0058698_103360972	3300005661	Agave	MASPTQTVVGKGIPNPLTAEDLIKILRELFPFDSAVKDRGKCWPLSPT*
Ga0058698_103646293	3300005661	Agave	MVSPTETVVGKGIPNPLIAEDLLKILRDLFPFDSTAKDRGKRGP*
Ga0058698_103663181	3300005661	Agave	MTSPTQTVISKGISNPLTAKDLLKVLKDLFPFDSAVKDREKCWPLSPT*
Ga0058698_104643961	3300005661	Agave	MASPTQTVVGKDVSNPLTAEDLLKIIRDLFSFDSAVKDRGKYWPLSLT*
Ga0058698_104848683	3300005661	Agave	MASLTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAAKDRGKHWSLSPT*
Ga0058698_105120102	3300005661	Agave	MASLTQTVVDKGVPNPLTAEDLLKILRDMFPFDSTVKDRGKCWPLSST*
Ga0058698_105279622	3300005661	Agave	MASPTQTVVGKGIPNLLTAEDLLKILRELFPFDSAVKDRGKCWPLSPT*
Ga0058698_105618092	3300005661	Agave	VVGKGMSNPLTAEDLLKILRDLFPLIDRGKCCPLSLTQVLDNSSC*
Ga0058698_105832931	3300005661	Agave	MASPTQMVVGKGISNPLTAKNLLKILRDLFPFDFAVKDKGKCWPLSPT*
Ga0058698_106006861	3300005661	Agave	MASPTQTVVGKGISNPLTAEDLLKILRDLFPFDPTLLTVKDRGKCWPLSPT*
Ga0058698_106006862	3300005661	Agave	MASPTQTVIGKGISNPLTAEDLLKILRDLFPFDPTHLTVKDRGKC*
Ga0058698_106039761	3300005661	Agave	MASLTQIVVGKGIPNPLIAEDLLKILRDLFPFDSAVKD
Ga0058698_106257431	3300005661	Agave	MASPTQMVVGKGIPNPLTAEDLLKILRDLFLFDSAVKDREKCWPLSPT*
Ga0058698_106296442	3300005661	Agave	MASPTQTVVGKGISNPLTAVNLLKILRDLFSFDPTHLKVKDRGKCWPLSPTYVLDNSSC*
Ga0058698_106470692	3300005661	Agave	MASPTQTAVGKGVPNPLTAEDLLKILRDLFPFDSVVKDRGQCCPLSPT*
Ga0058698_106567172	3300005661	Agave	MASPTQKVVGKGVPNTLTAEDLLKILRDLFPFDSAVKDRGKSWPLSLT*
Ga0058698_106750202	3300005661	Agave	MLAFKPKHKSSTTHHAEGNSMASLTQTVVGKGISNPLTAEDLLKILRDLFPFDSTIKDRGKCWPLSPT*
Ga0058698_107249521	3300005661	Agave	HKSLTTHHAEGNSMASPTQMVVGKGISNPLAAENLLKIRRDMFSFDSAVKDRGKCWPLSPT*
Ga0058698_107462201	3300005661	Agave	MASPTQTIVGKGISNPLTAEDLLKILRDMFPFDSAVKDRGKCWPLSPT*
Ga0058698_107462202	3300005661	Agave	MASPTQMIVGKRISNLLTAEGLLKILRDLFPFDSAVKDREKYWPLSPT*
Ga0058698_107486702	3300005661	Agave	MASPNQTVVGKGISNPLTAEDLLKILRDLFSFDFAVRDGGKCWALSPT*
Ga0058698_107925732	3300005661	Agave	MASPTQTVAGKGISNPLTAKDLLKILRDPFPFDPTPLTVKDRGKCWPLSPT*
Ga0058698_108113042	3300005661	Agave	SMASPTQTVVGKGIPNSLTAEDLLKILRDLFPFDSPVKGREKCWHLSPT*
Ga0058698_108227912	3300005661	Agave	MASPTQTVVGKGVPNPLTAEDLLKILRDLSPLNSAVKDREKCWLSPT*
Ga0058698_108254262	3300005661	Agave	MASPTQMVVGKGTPNPLTAEDLLKILRDLFPFDSAAKDRGKHWPLSPT*
Ga0058698_108365243	3300005661	Agave	LITHHAEGNSMASLTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058698_109200421	3300005661	Agave	MASSTQMVVGKDIPNPLIADDLLKILRDLFLFDSAVKDREKCWLLSPT*
Ga0058698_109423091	3300005661	Agave	MANPTQTVVGKGILNPLTAEDLLKILRDLFPFDPEVKDRGKCCPLSPT*
Ga0058698_109423092	3300005661	Agave	MASPTQTVVAKGIPNPLTAEDLLKILRDLFPFNSAVKDRGKC*
Ga0058698_109594371	3300005661	Agave	TQTVVGKGIPNPLTTKDLLKILRDLFPFDSTVKDRGKCWFLNPT*
Ga0058698_109802922	3300005661	Agave	MASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058698_109804421	3300005661	Agave	THHAEGNSMASPTQTIVGKGIPNPLTAENLLKILRDLFPFDSAIKDRGKCWPLSPT*
Ga0058698_109839161	3300005661	Agave	MASLTQTVVGKGIPNPLTAKDLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058698_109880811	3300005661	Agave	MASPTQTVVGKGIPNPLTAEDLLKILRDMFSFDPTPLTVKDRGKCWLLSPT*
Ga0058698_109944422	3300005661	Agave	MASPIQTVVGKGIPNPLTAEDLLKILRDLFPFNYTVKDRGKC*
Ga0058698_109944423	3300005661	Agave	MASPTQTVVGKDIPNSLTADDLLKILRDLFPFNFAVKDRAKC*
Ga0058698_110476812	3300005661	Agave	MASLTQTIVGKGVPNPLTAKNLLKILRDLFPFDSAVKDRGKCWPLSPT*
Ga0058698_110557353	3300005661	Agave	KSSTTHHAEGNSMASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSST
Ga0058698_110675561	3300005661	Agave	MASPTQKVVGKDISNSLTAEDLLKILRDLFPFDPTPLTVKDRGKCWPLSPT*
Ga0058698_110714881	3300005661	Agave	MASPTQTVVGKGIPNPLTAKDLLKILRDLFPFDSAVKDREKC*
Ga0058698_110923902	3300005661	Agave	MASPTETVIGKGISNPLTAEDLLKILRDLFPFDSAVKDRGKCWPLSP
Ga0058700_10125111	3300006021	Agave	QTVVGKGISNPLTAEDLLKILRDMFPFDPTPPMAKDRGKC*
Ga0268258_101263622	3300030502	Agave	MASPTQTVVGKGISNPLTAEDLLKILRDMFPFDPTPPTAKDRGKCWL
Ga0268249_10220631	3300030504	Agave	MASPTQTVVGKGMTNPLTAEDLLKILRDTFPFDPTPPTAKDRGKCWLLSPT
Ga0268250_100713591	3300030692	Agave	ENNMASPTQTIVGKGMSNPLTAEDLLKILRDLFPLIDRGKCWPLSPTQVLDNSSC
Ga0268250_101403451	3300030692	Agave	MVSPTETVVGKGIPNPLIAEDLLKILRDLFPFDSTAKDRGKRGP
Ga0268250_103041721	3300030692	Agave	GKGISNPLTAEDLLKILRDVFPFDPTPLTVKDRGKYWLISPT
Ga0268250_103939071	3300030692	Agave	MASPTQTVVGKGIPNPLTAEDLIKILRELFPFDSAVKDRGKCWPLSPT
Ga0268250_104028311	3300030692	Agave	GKGISNPLTAEDLLKILRDMFPFDPTPPTAKDRGKCWLLSPTSVFDNSSC
Ga0268250_104041761	3300030692	Agave	HAEGNSMASPTQTVVGKGMSNPLTAEDLLKILRDTFPFDPTPLTAKDRGKCWLLSPT
Ga0268250_104469461	3300030692	Agave	VGKGISNPLTAEGLLKILRDLFPFDPTPLTVKDRGKC
Ga0268250_104630641	3300030692	Agave	MASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDSAVKDRGKYWPLSPT
Ga0268250_104778412	3300030692	Agave	MASLTQTVVGKGISNQLTAEDLLKILRDLSPFDSTVKDRGKRW
Ga0268250_104943702	3300030692	Agave	MASSTQTVVGKGTPNPLTAEDLLNILRDLFPFDSAVKDRGKY
Ga0268250_105429081	3300030692	Agave	VVGKGVPNPLTAEDLLKILRDMFPFNFAVKDRGKCWPLSPT
Ga0268250_105915701	3300030692	Agave	MASPTQTVVGKGVPNSLTAEDLLKILRDLFPFDSAVKDRGKCWPL
Ga0268250_106236431	3300030692	Agave	SMASPTQTVVGKGIPNPLTAEDLLKILRDLFPFDFAVKNREKC
Ga0268250_106528972	3300030692	Agave	MPSLTQTAVGKGITNPLIAEDLLKILRDLFPFDSAVKDRGKCWHLSPT
Ga0268250_107113461	3300030692	Agave	MASPTQTVVGKGISNPLTTEDLLKILRDLFSFDSAVKDRGKC
Ga0268250_107332771	3300030692	Agave	VVGKGIPNPLTAQDLLKILRDLFPFDPAVKNRGKRWPLSPT
Ga0268250_107479981	3300030692	Agave	GKGTSNPLTAEDLLKILRDTLPFDPTPSTAKDRGKCWLLSPT
Ga0268250_107947542	3300030692	Agave	MASPTKTVVGKGIPNPLIAEDLLKILRDIFPFDSAVKNREKC
Ga0268250_108353482	3300030692	Agave	MASPTQKVVGKDISNSLTAEDLLKILRDLFPFDPTPLTVKDRGKCWPL
Ga0268251_102135132	3300032159	Agave	MASPTQTVVGKGVSNPLTAEDLLKILRDTFPFDPTPSTAKDRGKCW
Ga0268251_102635801	3300032159	Agave	GMSNPLTAEDLLKILRDTFPFDPTPSTAKDRGKCWPLSPT
Ga0268251_102744282	3300032159	Agave	MASPTQTVVSKGISNLLTAEDLLKILRDLFPFDSAVKDRGKYWPLSPT
Ga0268251_103322741	3300032159	Agave	SNPLTAEDLLKILRDTFPSDPTPPTAKDRGKCWLLSPT
Ga0268251_106178901	3300032159	Agave	MASLTQTVVGKGIPNPLTAENLLKILRVLFPFDSAVKDRGKCWPLSLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098162

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences