3300003849: Agave microbial communities from Guanajuato, Mexico - As.Sf.rz

Overview

Basic Information

• IMG/M Taxon OID: 3300003849
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104142 | Ga0058690
• Sample Name: Agave microbial communities from Guanajuato, Mexico - As.Sf.rz
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26275579
• Sequencing Scaffolds: 25
• Novel Protein Genes: 32
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	23
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter → Helicobacter pylori	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003840	Metagenome	466	Y
F004469	Metagenome	437	Y
F006682	Metagenome	367	Y
F015036	Metagenome	258	Y
F026434	Metagenome	198	Y
F033622	Metagenome	177	Y
F042061	Metagenome	159	Y
F042608	Metagenome	158	Y
F044772	Metagenome	154	Y
F046122	Metagenome	151	Y
F059418	Metagenome	134	Y
F071719	Metagenome	122	Y
F077883	Metagenome	117	Y
F079289	Metagenome	116	Y
F087839	Metagenome	110	Y
F090946	Metagenome	108	Y
F098162	Metagenome	104	Y
F099947	Metagenome	103	Y
F103985	Metagenome	101	Y
F103986	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058690_100225	Not Available	3388
Ga0058690_100615	Not Available	1648
Ga0058690_100976	Not Available	1286
Ga0058690_101369	Not Available	1095
Ga0058690_102266	Not Available	885
Ga0058690_102728	Not Available	823
Ga0058690_102788	Not Available	816
Ga0058690_103663	Not Available	731
Ga0058690_104070	Not Available	700
Ga0058690_104090	Not Available	699
Ga0058690_104413	Not Available	678
Ga0058690_104881	Not Available	651
Ga0058690_104982	Not Available	646
Ga0058690_105046	Not Available	643
Ga0058690_105143	Not Available	639
Ga0058690_105766	Not Available	611
Ga0058690_106347	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	587
Ga0058690_106359	Not Available	587
Ga0058690_106968	Not Available	565
Ga0058690_107090	Not Available	561
Ga0058690_107374	Not Available	552
Ga0058690_107682	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter → Helicobacter pylori	543
Ga0058690_107742	Not Available	542
Ga0058690_108453	Not Available	523
Ga0058690_108841	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058690_100225	Ga0058690_1002252	F103986	MVLVVHKGIYYIPDEDSTLAKVSSDPLHQSCLLARDGQGKYGGEGATVDKVADRILFLSHPRSNIEDSSCLLDGLLGKEMLMNEGLQDFLLPPDLKNTIALSLVS*
Ga0058690_100615	Ga0058690_1006152	F003840	MSLFLKALGYNVYLATTNNAYCIDGKNIEANAKALHALRSTLNDVYLSRVANLDMAFVVWNTLISLGENEQYYAGSDS
Ga0058690_100976	Ga0058690_1009761	F103986	MVLVVHKGIYYVPDEESTLAKVSSDLLHQSYLMARDGQGKYDGEEVPAVVVADRILFLSHSRSHIKDSPCPLDGLLGKEMFMNEGLQDFLLPPDLKNTIALSLVS*
Ga0058690_101369	Ga0058690_1013691	F103985	MFDHFRLNDWKANMTKHLKDLGHLVYQAITIESLPNSSKHKKANALALRALRASLNEFLLPVFDHYDSAFAVWSILTSPELPRIINKMRRSKREKSGEQCLMVQGKNSLEVQSDSHIDDSSSSYCHGCFEVQTLNMELAQKLENLLEKHDLLKEDNLVLKNELKDLCSNFELVLQEKEEIISERDSLESQLEIALKEIEVLKNKNDCDDVVKHNEILSSKLDFTFKENL
Ga0058690_102266	Ga0058690_1022662	F098162	MASPTQTVVGKGMSNPLTAEDLLKILRDTFPFDPTPPTAKDRGKCWLLSPT*
Ga0058690_102728	Ga0058690_1027281	F103985	MASPPMFDHFRLDAWKVDMTRHLKNLGHLVYQAITIEDQAITIEDLPNTSKHKKANALALRTLLASLNEHLFPILAKYDSAFAVWSILSSPELPVIINKIRRSKREASEELGFMAYGNDSHEVHSXSPLXXSSSSFCXGCFEVQNLNVELASKLESFMEKHNSLKKKHFDLKGELKDLCSTFESVLQEKEEITSERDSLQSQLDIALKEIEVLKNKNDLDDCDDFVEHNEVLSSRLDIVFKENLTLKNKIDSISKELDLVLIKNKS
Ga0058690_102788	Ga0058690_1027882	F098162	MASPTQTVVGKGMSNPLIAEGLLKILRDTFPFDPTPPTAKDRGKCWLLSPTSVFDNSSC*
Ga0058690_103663	Ga0058690_1036631	F059418	LYHRMVHHPTDKCYVLKDRIQALIDAGVLTLKTEQKKVTANMVTLEFGTAQKVTVPDGTYPAPMPRLEVKHPPAMTQNNKGLAPLTLETGEVIWIHPDLVQDIQQTSKDSSKKGKSCNVVSVLPDDGNLTSASLSDSEEEKHACTAQADAPQQTGTRSGKSXXRQYDKPTDEVPQQTTSVPMPTSAPVLTKGREKPKEVRFDQVLKKPPSQGLATPFRFDILAHLANIPARITIHELLRLSKE
Ga0058690_104070	Ga0058690_1040701	F004469	MDFMSPPTFDILNIQIWKVKMSMFLKALGIHVYLATFNDSYINNSKYIEGNAKALNALKSTLNDDYLFRVANIDSAFVAWNIITSLGEKDLYYAGSDSDVGSNTSNACFMVQGDNPLEVTXESEVEDDXMSYDELXSFCQLLLEKYDMKKKEIKNLKKDIACMHKEHDSFRDNIACLEK
Ga0058690_104090	Ga0058690_1040902	F006682	SMASPTQTVVGKGMSNPLIAEGLLKILXGLDSTLSSKIPYQFSSTEW*
Ga0058690_104413	Ga0058690_1044131	F006682	HHAEGNSMASPTQTVVGKGTSNPLIAEGLLKILSGLGSTLSSKIPYQFSSTEW*
Ga0058690_104505	Ga0058690_1045051	F033622	LSWANYLFNNVSKKDHSITRLASSSDQEIDDMVAQAPEGFYTTDSNEDGFEPDTLFESYHHQARTPISSRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAHGRPIALLQAVAAGIQSGLRALAQNFCEPPKTVDSHGQPLLDSEGKPTVKRNNPRIELPYTYLMAWYVMHCPFLMTPVRGSAHFVPFVQRLERSEWCDTYIY
Ga0058690_104722	Ga0058690_1047222	F026434	MATPLGTTFVTDEHTVVQDDVLRKGKMVESLIVEFDQAKYEEFLSSGSKSPKTRVCRRVSTTQPP
Ga0058690_104878	Ga0058690_1048781	F042608	QLAAQEAAEAISSDLRSLETEEAEVGSAIDASNSALLDAEDKVKRAEEMIRKANLLLSKATQMRHEEAARLEQLRARSEELARQKSSQRATLAEVEARLAQAVDFDEAELRSQALAQAADDRRTRLASLGDRIRSYHVRL*
Ga0058690_104881	Ga0058690_1048811	F006682	MASPTQTVVGKGTLNPLTAEGLLKILSGPDSTLPSKIPYQFSSIEW*
Ga0058690_104982	Ga0058690_1049821	F071719	QYFQDSYSVPPVQNRKPSILEMSMRESKQKSQNLMDSQFHHQFQDNTSSFQQNDEPINYEKMLEAMTQAQNARNHDIDMMVQTLRSHRLASSDVVNHSVRAEESCCFGKQGSISAQSFELAQTPNFENDIDSLASYSFPEIELENEYDPEPQLSDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHHEIESPIFDDHHIELDQFYTFESPIDKL
Ga0058690_105046	Ga0058690_1050461	F059418	VLTLKTEQKKVTANMVTLEFGTAQKVMVPGETYSAPAPRLEIKHPPATTQNNKGLVPLTLETGEVMWIHPDLIQDVQQTSKDSSRKGKSCNIISVLPDDGNLTSASLSDSEEEKHACAAQADAPQQTGTRSGKSYLRQYDKPTDEIQQLTTSVPMPTSTPIPAKGKEKPKEVRFDHVLKKPPGQGLATPFRFDILAHLANIPARITIHELLRL
Ga0058690_105143	Ga0058690_1051431	F004469	MDFMSPPTFDILNIQIWKVKMSLYLKALGFHVYLATTNNAYSLDGKNFEANAKALNALKSTLDDVYLSRVANIDSAFVVWNTLTSLGEKDLYYAGSDSDVGSDISNVCYMVQGDNPL
Ga0058690_105450	Ga0058690_1054502	F015036	EARLTAQEAAEAISSDLKSLETRQAEVGNAIDASTSALLDAEDRIAKAKEMIRKGNLLLSKAEPVRLEEAARLEQLKAQSDELSQQGLSQRATLAEVEARLAQAMDFDEAELKSQALAQAADNRRTRLASLGERIRSYNVRL*
Ga0058690_105766	Ga0058690_1057661	F046122	TDALLYQEADGTPAEPLPDDDESGNEADSESEIGMPAILIGEPITACFLNDPQCNTPSDEEGEWVINDNISFDYPASIGSIKSIIEGSLHMPVHEPSSATTSVEVIEGATLVIPPSKQGQLPIIFGRTQPRGPAATDSSSDSEAPQFFHYAPSARHIMKKMGYNLKQGAGLNFGKGRRSLMRNSVPRGKPANYYDSTRRGLGY
Ga0058690_106347	Ga0058690_1063471	F044772	PVGEMGLALHELHEVSGLVTGDMPYEEYVPTAVELRHVKEEFPRIYETYWEVLCHFHICGQLTKWRSQGVTYLSWASYLFNNVNVKDHLITRLAPSTDREIEDRIDQAPEKFYTTESNEDGFDPDLVFESFHHQARTPISDRALLAGFLMLWLKRCVVPTLPHEVVVADVVYPAVLLAHGNPIALLPTMVAGIQS
Ga0058690_106359	Ga0058690_1063591	F042061	MSFLAATKRCYLGDCNHIGANAQALEAIRSTLPKDYLLCVSNLDSAFAVWNKLTTTTTSELQ
Ga0058690_106968	Ga0058690_1069681	F071719	NEPINYEKMLEAMTQAQNTRNRDIDMMVESLRSHRWTSSDVTNHSVRAEESCSFGNQDSISEQPFELAQTPNFEKDIDSLASFPFPEIELENEYDPEPQLSDSILLPDSIMTPVSSPDFDLFPESTLDPMPIHHEIESPIFEDHIELDQLYNFENPIDKLASSQFFDIELNEICDLDSQICDPVQLSE
Ga0058690_107090	Ga0058690_1070901	F087839	MTPVSSPDFNLFPESTLDPVPIHHEIESPIFDDHIELDQFYTFESPIDKLASSHFYDIELNEKCDLDSQICDPVQIPESILTPVLLPDLSNILESVLIPTPIILELESPILSHIPLLENKCGLEFQLLDLDPIPEPISTPEPLLDLSHLPESVLVPVLPESKSIILSFHTPFWDEVVDKFDSEISY
Ga0058690_107374	Ga0058690_1073742	F077883	GASLKLYFNPCIYNFMSFVIIKKGEIVGPKAYHSSFDDDQLM*
Ga0058690_107504	Ga0058690_1075041	F059418	PAPAPRLEVRHPPAMTQDNKGLVPLTLETGEVIWIHPDLVQEVQRDSKEPNLKGKSCNVISVLPDDGNLTSASLSDSEGEKLACTAQADTPQQTGTRSGKSYLRQYEKSTDETQQQTTSVQVPASTPIPTKGKERPKEVRFDHVLKKPPGQGFDTPFRFDILAXLANIPARITIHELLRLSK
Ga0058690_107682	Ga0058690_1076821	F103985	VXMXXXLKGLGHLVYQAITIESLPNSSKHKKANALALRTLLASLNEHLLPIFDRYDSAFAVWSILTSPELPRIINNLRRSKRDMSKDKCFMVQGKDSLEVHSDSPLDDSSNSYCHGCFEVQTLNMELTQKLEKFLEKHKLLKENNLVLKNELKDLCSNFEVILQEKEEITSERDSLQSQL
Ga0058690_107742	Ga0058690_1077421	F090946	MVQGNDSLEVHSETPLDSDDDASSSSNDIVDPHALNEELSIVCEKLIEKYKILKKKSLDIEKENKSLHARLDCVLQEKVEVYNERDSLRSQLELALKENEFLKSKNDCHAILKKNENLSSKVDFVLKENDSLKIKIASISKDLDACLKKNEFLXXXIDXHVCHASVASSSSLPNACTSSS
Ga0058690_108453	Ga0058690_1084531	F046122	FTDALLYQEASGTPGEPLPDDDESGNEADSESETGMPAILIGEPIVACFNDPRCKIPXXEEGEWIINDNISFDYPASIESIKSIMDGSLHMPVHEXSVAXTSVEAIEGATLVVPPSKQGQAPIIFGRARPGRFSTTDSSSESDAPQFFHYAPSARHIMKKMGYNLKQGAGLNF
Ga0058690_108841	Ga0058690_1088411	F099947	PFANIMENKMATPLGTDLSTAEDQVSQCDDQTLGSISEFRKAGAARSSLAKSSRTVSAETEKVLHKPAAVLWRNKEARPRSKFCTFKNLVVRSNQRRFEEVLSGGGLMLRARKHKKVFMAKVSNQKPEAEFCQHPAASHVASQVPCEPMHPLPKRIWKPKQKSSAEASGVA
Ga0058690_109029	Ga0058690_1090291	F079289	LHFGTRPPMPVGVISVPKGELRVVNTDPHQQQEKGLVPVPTPEGGIMWVHPDLVDEQQWTTVTNRKSKGKGKASSCHVICASSREADADVPSLTDSEEXTIVLAAEPNQPTAGTRSGQAYLKQYGEKAVVPPQPAVKPAQPSTKPPVEKQKETRFSRVLSRSAAEGSSTP
Ga0058690_109069	Ga0058690_1090691	F003840	MDFMSPPTFDILNIHIWKVKMSLFLKALGYNVYLATTNNAYCIDGKNLEANTKALNALKSTLDDAYLSR