3300006021: Agave microbial communities from Guanajuato, Mexico - At.Am.e

Overview

Basic Information

• IMG/M Taxon OID: 3300006021
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104152 | Ga0058700
• Sample Name: Agave microbial communities from Guanajuato, Mexico - At.Am.e
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121341148
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini → Aphis → Aphis → Aphis craccivora	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F004469	Metagenome	437	Y
F007730	Metagenome	346	Y
F024450	Metagenome	205	Y
F029983	Metagenome	186	Y
F031315	Metagenome	182	Y
F031689	Metagenome	182	Y
F038011	Metagenome	166	Y
F042061	Metagenome	159	Y
F044772	Metagenome	154	Y
F046122	Metagenome	151	Y
F054465	Metagenome	139	Y
F059418	Metagenome	134	Y
F068297	Metagenome	124	Y
F070775	Metagenome	122	Y
F087716	Metagenome / Metatranscriptome	110	Y
F087839	Metagenome	110	Y
F098162	Metagenome	104	Y
F099947	Metagenome	103	Y
F103985	Metagenome	101	Y
F103986	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058700_1004510	Not Available	1331
Ga0058700_1005320	Not Available	1110
Ga0058700_1005349	Not Available	1101
Ga0058700_1007491	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	824
Ga0058700_1008480	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	746
Ga0058700_1008519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	743
Ga0058700_1008733	Not Available	730
Ga0058700_1008864	Not Available	721
Ga0058700_1009322	Not Available	696
Ga0058700_1010331	Not Available	648
Ga0058700_1010383	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	646
Ga0058700_1010532	Not Available	640
Ga0058700_1010560	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini → Aphis → Aphis → Aphis craccivora	639
Ga0058700_1011031	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	621
Ga0058700_1011263	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	613
Ga0058700_1011679	Not Available	600
Ga0058700_1012258	Not Available	583
Ga0058700_1012511	Not Available	575
Ga0058700_1012899	Not Available	565
Ga0058700_1013468	Not Available	551
Ga0058700_1013871	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	542
Ga0058700_1014202	Not Available	535
Ga0058700_1014613	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058700_1004510	Ga0058700_10045102	F007730	IIIKTRVEGLWANNLPLFDDDKTHGVIYAWIKVKLQRSSPLTHA*
Ga0058700_1005320	Ga0058700_10053201	F103985	MFDFSRHDIWMAKMSSHLKSLGHLVYQATTQESYPNASKHKKANALALKTLRASLNEDLFLHVFAHYDSAFTVWSILTSPELPRIINKLRRSRRDKSDEHCLMVQGKDSLEVQSDSQLDDSSSSYCYGCFEVQNLNVELATKLEKFLEKHDLLKKKNFDLKEEMKDLCSSFE
Ga0058700_1005349	Ga0058700_10053492	F099947	MATPLGTVFSSAENQVSQCDEQTFGSISEFRKAGAARSSLAKSSSKVSAETEKVLCKPAAVLWRNKETCPQPRSCTFENLVIQIDQGRFEEVLSGGGLMLRARKHRKVFMAKVSNQKPEAESCQHPTAPLVAIQVPCEPRRPLSRLIWKPKQESSTEAPGVVMPRLRLSREEKGKMPICPDDVVSHEVTTAIIPSPE
Ga0058700_1007491	Ga0058700_10074912	F070775	VEKQKETRFSRALQRGIAEGSSAPYRFDVLAQLANIPARITLYELLRLSKSTREALQEALANAEVFMTQVPKEEDVKDCLLASPNAPCITFTTDDMQVKGKHDRPLYFTGYIGSSEVNRIQVDPGSALSIIPRRVMQFLGIPTHRLSPTQTTIYGFNANSSRPMGK
Ga0058700_1007700	Ga0058700_10077001	F038011	QITSWRARGVKQLSWASYLFNGITEKDHSVTSLAPRSDEEIAERIDASVSSYTTESNEDTFKPDMVFESFHHQAQIPISNRALLAGFLMLWLKRCVVPTLSHEVIVADVVYPAVLLAYGRSILSFRQWWPVSKAGCGP*
Ga0058700_1008480	Ga0058700_10084801	F054465	VFFFGDNIGEDGSILHDGDYKWLRQTGGRKFFLPNMERMYPLSYLHHMSVHRAMEWKLTRSVPSVSLGVLGARKVHPEGHGKEVFGLFPGLLRSEYPVGETPQLSTTFINQFMKVRGDFPIDFRPLGWVYSSDKSWWGKMVGFVLVELGALLEQLGLYQVVRTVQYGIPQSSHNFYGILEHYNPLTGTFFTPIGEMGLVLHELYEVSGLVMGDAPYEEYVPTSEELHLLKKECPRVYETYWEVLCHFH
Ga0058700_1008519	Ga0058700_10085191	F087716	MTKEEIEALVARERPGWRVVEVVEANDESGPSFEVAVERGDDRLTLLVGADERIVGERR*
Ga0058700_1008733	Ga0058700_10087331	F103985	WKANMTKHLKDLGHLVYQAITTESLPNSSKHKKANALALRALRASLNEFLLPVFDHYDSAFAVWSILTSPELPRIINKMRRSKREKSEEQCLMVQGKNSLEVQSDSHIDDSSSSYCHGCFEVQTLNMELVQKLENLLEKHDLLKDDNLVLKNELKDLCSNFELMLQEKEEIASECDSLKSQLELALKENEFLKNKNDCDDVVKHNEILSSKLDFTFKENLTLKNDIDSITRELDLVLIKNKS
Ga0058700_1008864	Ga0058700_10088641	F042061	MYLKTLGIHAYLAATKKCYLGNGDHIGANAQALEAFRSTLPKDYLMRVSNFDSAFAVWNLLTTTTT
Ga0058700_1009322	Ga0058700_10093221	F046122	EPITACFLNDPQCNTPSDEESEWVINDNISFDYPASIGSIKSIIEGSLHMPVHEPSSATTSVEVIEGATLVIPPSKQGQLPIIFGRTQPRGPAATDSSSDSEAPQFFHYAQPARHIMEKMGYDLKQAGGLNFGKGRRGLMRNAVPKGKPVNYYDSTRRGLGYVTPTSSVTVQVKDDEPIPSRSDSSAEWDSDVSMGGMFNGLTVKFTVRPLNVPPMLASESHSADESDRDG
Ga0058700_1010331	Ga0058700_10103311	F004469	MDFMSPPTFDILNIHIWKVKMSLFLKALGYNVYLATTNNAYCIDGKNLEANTKALHALKSTLNDDYLCRVANIDMAFVVWNTLISLGENEQYYAGSDSDVGSDTSNKCY
Ga0058700_1010383	Ga0058700_10103831	F031315	ETQQQTTSVQVPASASIPTKGKEKPKEVRFDQVLKKPSGPGLDTPFRFDILAQLANIPARITIHELLRLSKETREALRDALANSESFLTYMLEIPKDNAQSFYPKCHHVQSKVPAITFTAEDMILKENKHDRPLYYTGYIGSTCIERVQVDPGSALSIIPKRLLYFLGIPLYRLSATTTTIYGLNAGSSHPLGKIRLRCRIGSLKSEVTCYVIDA
Ga0058700_1010532	Ga0058700_10105321	F087839	QISDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHNEIESPIFDDHHIELDQFHTFESPIDKLASSHFYEIELNEKCDLDSLICDPVQILESILTPILLPDLSNILESVLIPTPVILELESPILSHIPLWENQCGLEFQLLDLDPLPEPISTPEPLLDLSHFYELVLVPVFP*
Ga0058700_1010560	Ga0058700_10105602	F029983	MSLCCTVGYKWVTVMDGVKFEFNDIISLYKKNDSERKRSVSL*
Ga0058700_1011031	Ga0058700_10110312	F003605	MAVGDDATAAGYPLVPDTGENGRVRWGAREINFTRDLVAQLKKLLPGSKAAFRTNAGISSGTPPPSGGDDGDIYFQIL*
Ga0058700_1011263	Ga0058700_10112631	F044772	FGILERYNPLTGTFFTPVGEMGLALHELHEVSGLAAGNIPYEEYVPTTEELHLLKKEFPRVYETYWEVMCHFHICGQLIAWRSQGVKQLSWASYLFNGVNKKDHPITRLVPSSDEEIEDRITQAPEGFYTTVSNEDGFDPDLVFESFHHQARTPISDRALLAGFLMLWLKRCVVPTLPHEAIVADVVYPAVLLAHGNPIALLPA
Ga0058700_1011679	Ga0058700_10116792	F103986	MVLVVCKRVNYISDEDPNLAKVSSDLLHHSCLMARDGQGMHDGDEVPAVAVAERILFLSHPRSDIKDSPCPLDGLRGKDQLLNEGLQALLLPPDLKNTIAPGLVS*
Ga0058700_1012258	Ga0058700_10122581	F068297	VFSDTEYPELTANMASKSRGKQPTISSDDESDTEPEGVYRHTRTRTGAIPPIDYNALARGIEVNDSHSAIAESQASNSSIEKEAFIYMTSTPEETARRLEQQAQV*
Ga0058700_1012511	Ga0058700_10125111	F098162	QTVVGKGISNPLTAEDLLKILRDMFPFDPTPPMAKDRGKC*
Ga0058700_1012899	Ga0058700_10128991	F031689	HVPIKSSFGTYHDDGDAQGSSFMVPARQKGQRPILFGRIMSEPTPHEESEGEEEPPQFNHYEPRTFKMMKRMGYDLASRPGLNFGKGRRSLLRSFVPKGKAPDYYHQTRRGLGYVSTPIPSASEFEESLYHNHSSDTSSWESDVSVGSIFKEISVNMVSTSHPEDGDEEMIQ*
Ga0058700_1013468	Ga0058700_10134681	F031689	HVPVKSSFGTYQDNGDAQESIFIVPTRRKGQKPILFGRMTTEPTPREESESEEESPQLDHYESKALRMMKQMGYDLTNKPGLNFGKGRRTLLRSFVPKGKAPDYYHRTRRGLGYVSTPVPSASDSRESSGHDCSSDTSSWESDVSVGNIFKGLSVNMVSTGHLEDEDEEMIQPDTDPWIKHLN
Ga0058700_1013871	Ga0058700_10138711	F024450	RVVRPYPTEWDLVPYPPKFKAPTLQAFDGKGSPNQHIYYFKSQTGNVVDNDAILARLFIGTLKGIAFE*
Ga0058700_1014202	Ga0058700_10142021	F103985	FALMASPPMFDHSRLDSWKVNMTRYLKTLGHLVYQAITIEALPNTSKHKKANALALQTLRASFDNNILLVFDSFNSAFAVWSVLTSPELPRIINNMRRSRRDVSEGPCFMAYGNDSHEVQSDSQIDDSSNSLCYSCGEVQTLNVELASKLEKFLEKHELLKKKHFDVKEELKDLCST
Ga0058700_1014613	Ga0058700_10146131	F059418	KVMVPGETYSAPAPRLEIKHPPATTQNNKGLVPLTLETGEVMWIHPDLIQDVQQTSKDSSRKGKSCNVISVLPDDGNLTSASLSDSEEEKHACTAQADAPQQTGTRSGKSYQRQYDKPTDEIQQQTTSVPMPASTPIPAKGKEKPKEVRFDHVLKKPPSQGLDTPFRFDILAHLA