Metagenome / Metatranscriptome Family F093903

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093903
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	89 residues
Representative Sequence	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKASIELIWENKVGDNDAHNLNLIFSEEFVIAATSDG
Number of Associated Samples	90
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.23 %
% of genes from short scaffolds (< 2000 bps)	91.51 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (63.208 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine (20.755 % of family members)
Environment Ontology (ENVO)	Unclassified (73.585 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.453 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114 12007054089 2SI34jun09_200mDRAFT_10437262 3SI39nov08_150mDRAFT_10079731 4SI54feb11_200mDRAFT_10214132 5JGI20154J14316_100630113 6JGI20157J14317_100273545 7JGI20159J14440_100242205 8JGI20155J14468_100522951 9JGI20155J14468_101045881 10JGI20155J14468_102557962 11JGI20158J14315_100839982 12JGI20158J14315_101365382 13GOS2218_10070351 14GOS2229_10610724 15JGI26270J51728_10077774 16JGI26272J51733_10159481 17JGI26273J51734_101139842 18Ga0066605_100252325 19Ga0075515_108715013 20Ga0105741_10890071 21Ga0104258_10441012 22Ga0115552_11819012 23Ga0114993_108136971 24Ga0114998_105240602 25Ga0115005_110448752 26Ga0115008_103747091 27Ga0115561_10838221 28Ga0115561_11909432 29Ga0115561_13719821 30Ga0115563_11126023 31Ga0115557_10420661 32Ga0115557_12223551 33Ga0115558_12468201 34Ga0115565_105646472 35Ga0115555_13903722 36Ga0115571_10823881 37Ga0115570_102643582 38Ga0115003_108365621 39Ga0115000_105511792 40Ga0114999_104754021 41Ga0129331_15285812 42Ga0134300_10457121 43Ga0180120_100104731 44Ga0181392_12395111 45Ga0181400_10668273 46Ga0206128_11075153 47Ga0206128_12962661 48Ga0206127_12671901 49Ga0206129_102084281 50Ga0206129_102823511 51Ga0206126_102662181 52Ga0206677_102147542 53Ga0213863_102530582 54Ga0213868_105581421 55Ga0222716_105501811 56Ga0222715_105194671 57Ga0233426_103607281 58Ga0233432_103552541 59Ga0228681_10228771 60Ga0232119_10244911 61Ga0228668_10588572 62Ga0228669_10487292 63Ga0233435_10791003 64Ga0233442_10348821 65Ga0228630_10214973 66Ga0228657_10402141 67Ga0228631_10570033 68Ga0228632_11153822 69Ga0209557_10294573 70Ga0209197_10563413 71Ga0209042_10883531 72Ga0209196_10909621 73Ga0209667_10138131 74Ga0209714_11373261 75Ga0209603_12016111 76Ga0209119_10521881 77Ga0209533_10888373 78Ga0209534_100990333 79Ga0209534_101042563 80Ga0209534_102754442 81Ga0209534_103907222 82Ga0209534_104347812 83Ga0209309_102759511 84Ga0209309_103954732 85Ga0209632_102633702 86Ga0209632_102710941 87Ga0209631_103159162 88Ga0209631_104026612 89Ga0209630_102482641 90Ga0209630_104662671 91Ga0209335_104549261 92Ga0247569_10518961 93Ga0247591_10635721 94Ga0228622_10946412 95Ga0228647_11478402 96Ga0247590_10419423 97Ga0233397_10574241 98Ga0228634_10299343 99Ga0228619_11205042 100Ga0247572_10392221 101Ga0247583_10923582 102Ga0228627_11333331 103Ga0307986_100425134 104Ga0315330_103136681 105Ga0315315_102751371 106Ga0315321_103583912
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114 12007054089 2SI54feb11_200mDRAFT_10214132 3JGI20154J14316_100630113 4JGI20155J14468_101045881 5GOS2218_10070351 6Ga0115565_105646472 7Ga0134300_10457121
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114 12007054089 2SI54feb11_200mDRAFT_10214132 3JGI20154J14316_100630113 4JGI20155J14468_101045881 5GOS2218_10070351 6Ga0115565_105646472 7Ga0134300_10457121
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 30.59% β-sheet: 24.71% Coil/Unstructured: 44.71%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF09976	TPR_21	83.02
PF00005	ABC_tran	9.43
PF08352	oligo_HPY	4.72
PF13360	PQQ_2	1.89
PF13393	tRNA-synt_His	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.79 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.79 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.79 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.91 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33.96 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	33.02 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	2.83 %
Unclassified	root	N/A	63.21 %
unclassified Nitrosomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales	24.53 %

Name	Rank	Taxonomy	Distribution
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	2.83 %
Methylophilales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	13.21 %
OM43 clade	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade	11.32 %
Unclassified	root	N/A	63.21 %

Name	Rank	Taxonomy	Distribution
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	2.83 %
Methylophilales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	13.21 %
Methylophilales bacterium HTCC2181	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	11.32 %
Unclassified	root	N/A	63.21 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022920\|Ga0233426_10360728	Not Available	548	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10355254	Not Available	657	Open in IMG/M
(restricted) 3300024252\|Ga0233435_1079100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1155	Open in IMG/M
(restricted) 3300024257\|Ga0233442_1034882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1652	Open in IMG/M
2006543006\|2006905460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	750	Open in IMG/M
3300000172\|SI34jun09_200mDRAFT_c1043726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	811	Open in IMG/M
3300000195\|SI39nov08_150mDRAFT_c1007973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1367	Open in IMG/M
3300000214\|SI54feb11_200mDRAFT_c1021413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	806	Open in IMG/M
3300001348\|JGI20154J14316_10063011	All Organisms → cellular organisms → Bacteria → Proteobacteria	1442	Open in IMG/M
3300001352\|JGI20157J14317_10027354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	3075	Open in IMG/M

Showing 1 to 10 of 106 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	24.53%
Inlet	Environmental → Aquatic → Marine → Inlet	3.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.09%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	20.75%
Oceanic	Environmental → Aquatic → Marine → Oceanic	7.55%
Pelagic	Environmental → Aquatic → Marine → Pelagic	22.64%
Strait	Environmental → Aquatic → Marine → Strait	1.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	24.53%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	22.64%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	20.75%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	15.09%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.89%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.89%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.94%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	11.32%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.60%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.94%
Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water	0.94%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	20.75%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	16.98%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	19.81%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	5.66%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.77%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	3.77%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.89%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2006543006	Marine microbial communities from anoxic basin of Saanich Inlet - SI040908_100	Environmental	Open in IMG/M
3300000172	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 200m	Environmental	Open in IMG/M
3300000195	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 150m	Environmental	Open in IMG/M
3300000214	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 200m	Environmental	Open in IMG/M
3300001348	Pelagic Microbial community sample from North Sea - COGITO 998_met_04	Environmental	Open in IMG/M
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental	Open in IMG/M
3300001353	Pelagic Microbial community sample from North Sea - COGITO 998_met_09	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300001947	Marine microbial communities from the Gulf of Maine, Canada - GS002	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2007054089	2006543006	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNHCIF
SI34jun09_200mDRAFT_10437262	3300000172	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVR
SI39nov08_150mDRAFT_10079731	3300000195	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSV
SI54feb11_200mDRAFT_10214132	3300000214	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETVWKKEFSQ
JGI20154J14316_100630113	3300001348	Pelagic Marine	MKLIPLWILTLLLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHI*
JGI20157J14317_100273545	3300001352	Pelagic Marine	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKM
JGI20159J14440_100242205	3300001353	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMQLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHMRLVRLYGKKIFLKIS*
JGI20155J14468_100522951	3300001354	Pelagic Marine	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFSDEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAAT
JGI20155J14468_101045881	3300001354	Pelagic Marine	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGDNDINNLNLIFSEEF
JGI20155J14468_102557962	3300001354	Pelagic Marine	MRLIPLVILTSFMFGCIVQPVQDFVDQMDDQYFADEFSNIPTEIKPYDKKASIELIWENKVGGNDAHNLNLIFSQEF
JGI20158J14315_100839982	3300001355	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMLYXDW*
JGI20158J14315_101365382	3300001355	Pelagic Marine	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMQLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNI
GOS2218_10070351	3300001947	Marine	MRLIPLIFFTSLLVGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYEKKASMQLIWENKVGDNDVNDLNLIFSEEFVIAATSDGSLRKMQIENGK
GOS2229_10610724	3300001963	Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMQLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGET
JGI26270J51728_10077774	3300003599	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSXEFVIAATSDGSVRKMKINS
JGI26272J51733_10159481	3300003600	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETV
JGI26273J51734_101139842	3300003620	Marine	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGDNDINNLNLIFSEEFVIAATSDGSIRKMQMATGETVWEK
Ga0066605_100252325	3300004279	Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMQLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMH
Ga0075515_108715013	3300006404	Aqueous	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSVKLLWENKIGDNEVSNLSLIFSDEFVIAATSDGNIRKMHIETGET
Ga0105741_10890071	3300007956	Estuary Water	MRLIPLIFLISLLFGCVFGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKIGDNDANNLNLIFSEE
Ga0104258_10441012	3300008993	Ocean Water	MRLIPLIFLTFLLAGCFIGPVEDFVDQMDDQYFADEFNDIPTEIKPYDKKASIELIWENKVGDNDALNLNLIFSQEFVIA
Ga0115552_11819012	3300009077	Pelagic Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMQLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGETVWQKDISENIMM
Ga0114993_108136971	3300009409	Marine	MRFIPLIFFTSLLVGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYEKKASMKLIWENNIGDNDVNNLNLIFSEEFVIAATSDGSLRKMQIEN
Ga0114998_105240602	3300009422	Marine	MRLIPLIFFTSLLFGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYNQKASMKLIWENKVGDNDVNDLNFIFSEEFVIAATSDGSLR
Ga0115005_110448752	3300009432	Marine	MRLIPLIFLTSLLFGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYNQKASIELIWENKVGDNDVNDLNLIFSEEFVIAATSDGSLRKMQMTTGETIWE
Ga0115008_103747091	3300009436	Marine	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDAHNLNLVFSEEFIIAATSDGSLRKMQ
Ga0115561_10838221	3300009440	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSD
Ga0115561_11909432	3300009440	Pelagic Marine	MRLIPLIFLTSLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDINNLNLIFSEE
Ga0115561_13719821	3300009440	Pelagic Marine	MRLIPLLFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNNIPTEVKPYERKASIKLIWENKIGDNDVNNLNLIFSEEFVIAATSDGSVRKMHLATGETV
Ga0115563_11126023	3300009442	Pelagic Marine	MKLIPIWVLTIFLGGCFIGPVEDFVDQMDDQYFTDEFNNVPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDG
Ga0115557_10420661	3300009443	Pelagic Marine	MKLIPLWIVTILLGGCFIGPVEDFVDQMDDQYFTDEFNNIPTEIKPFNKKTSMKLLWENKFGDNKVSNLNLIFSDEFVIAATSDGNIRKMYIETGETV
Ga0115557_12223551	3300009443	Pelagic Marine	MRLIPLIFLTSLFSGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKATIELIWEKKVGDNDAHNLNLIFSEEF
Ga0115558_12468201	3300009449	Pelagic Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDDFVIAATSDGNIR
Ga0115565_105646472	3300009467	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKVGDNEVNN
Ga0115555_13903722	3300009476	Pelagic Marine	MRLIPLIFFTLLLSGCFIGPVEDFVDQMDDQYFADEFNNVPTEIKPYEKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDGSVRKMQMATGETIWEK
Ga0115571_10823881	3300009495	Pelagic Marine	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFSDEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAA
Ga0115570_102643582	3300009496	Pelagic Marine	MRLIPLIFLTSFLVGCFIGPVEDFVDQMDDQYFADEFNNVPTEIKPYEKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDGSVRKMQMATGETVWE
Ga0115003_108365621	3300009512	Marine	MRLIPLIFLTSLLFGCFVGPVQDFVDQMDDQYFADEFNDIPTEIKPYNKKASIELIWENKVGDNDVNDLNLIFSEEFVIAATSD
Ga0115000_105511792	3300009705	Marine	MRLIPLIFFTSLLFGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYEKKASMQLIWENKVGDNDVNNFNLIFSEEFVIAATSDGSLRKMQIENGK
Ga0114999_104754021	3300009786	Marine	MRLIPLIFFTSLLFGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYEKKASMQLIWENNIGDNDVNNLNLIFSEEFVIAATSDGSLRKMQIENGKTI
Ga0129331_15285812	3300012524	Aqueous	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSIQLLWENKIGDNEVSNLNLIFSDEFVIAA
Ga0134300_10457121	3300014818	Marine	MRLIPLIFLTLLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGGNDAHNLNLIFSQEFVIAATSDGSVRKMQMATGETVWERKISEEIV
Ga0180120_100104731	3300017697	Freshwater To Marine Saline Gradient	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFSKKTSMKLLWENKVGDNEVNNLNLIFSDEFVIAATSDGNIRKMHIETGET
Ga0181392_12395111	3300017749	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDINNLNLIFSEEFVIVATSDGSIRKMQF
Ga0181400_10668273	3300017752	Seawater	MRLIPLIILISILSGCIFGPVEDFVDQMDDQYFADEFNNIPTEIKPYEKKAFIELIWENKVGDNDINNLNLIFSEEFVI
Ga0206128_11075153	3300020166	Seawater	MRLIPLIFLTSLFSPCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKATIELIWENKVGYNEAHNLNLIFSEEFVIAATSDGSLRKMQMTTGEAIW
Ga0206128_12962661	3300020166	Seawater	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFSDEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVI
Ga0206127_12671901	3300020169	Seawater	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGDNDINNLNLIFSEEFVIAATSDGSIRKMQMATGETIWEKDISE
Ga0206129_102084281	3300020182	Seawater	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMY
Ga0206129_102823511	3300020182	Seawater	MKLIPLWILTILLGGCIIGPVEDFVDQMDDQYFADEFNNIPTEIKPFSKKTSMKVLWENKIGDNEVNNLNLIFSDEFVIAATSDGNIRKMHIETGETV
Ga0206126_102662181	3300020595	Seawater	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGE
Ga0206677_102147542	3300021085	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKANVELIWENKVGDNDAHNLNLVFSE
Ga0213863_102530582	3300021371	Seawater	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLSLIFSDEFVIAATSDGNIRKMHIETGETVWQKDISENIMM
Ga0213868_105581421	3300021389	Seawater	MRLIPLIFLISLLFGCVFGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKIGDNDANNLNLIFSEEFVI
Ga0222716_105501811	3300021959	Estuarine Water	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAA
Ga0222715_105194671	3300021960	Estuarine Water	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASMELIWENKVGDNDINNLNLIFSEEFVIA
(restricted) Ga0233426_103607281	3300022920	Seawater	MKLIPLWIVTILLGGCFIGPVEDFVDQMDDQYFTDEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKM
(restricted) Ga0233432_103552541	3300023109	Seawater	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATS
Ga0228681_10228771	3300023683	Seawater	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDG
Ga0232119_10244911	3300023702	Seawater	MRLIPLILFYLLLPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKTSIEPIWENKVGDNDAQNLNLVFSEEFIIAATSDGSLRKMQMVTG
Ga0228668_10588572	3300024180	Seawater	MRLIPLIFITLLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGENDAHNLNLIFSQEFVIAASS
Ga0228669_10487292	3300024185	Seawater	MRLIPLIFLIYILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASMELIWENKVGDNDINNLNLIFSEEFVIA
(restricted) Ga0233435_10791003	3300024252	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKASLELIWENKVGDNDAHNLNLVFSEEFVIAATSDGSLRKMEMATGEAVW
(restricted) Ga0233442_10348821	3300024257	Seawater	MRLIPLGIITFLFAGCMFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSDEFVIAATSDGSVRKMKINSGETV
Ga0228630_10214973	3300024292	Seawater	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFANEFNNIPTEIKPYDEKASIELIWENKVGDNDINNLNLIFS
Ga0228657_10402141	3300024314	Seawater	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGDNDINNLNLIFSEEFVIAA
Ga0228631_10570033	3300024329	Seawater	MRLIPLIFLTSLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDINNLNLIFSEEFVIVATSDGSIRKMQMTTG
Ga0228632_11153822	3300024420	Seawater	MRLITLILLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEVKPYEKKASIKLIWENKIGDNDVNNLNLIFSEEFVIAAN
Ga0209557_10294573	3300025483	Marine	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDAHNLNLIFSQEFVIAA
Ga0209197_10563413	3300025637	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDKFVI
Ga0209042_10883531	3300025644	Marine	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETVWKKEFSQKI
Ga0209196_10909621	3300025654	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDG
Ga0209667_10138131	3300025707	Marine	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKASIELIWENKVGDNDAHNLNLIFSEEFVIAATSDG
Ga0209714_11373261	3300025822	Pelagic Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGETVWQ
Ga0209603_12016111	3300025849	Pelagic Marine	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASMELIWENKVGDNDINNLNLIFSEEFVIAATSDGSLRKLQMATGETIWEKEISEKI
Ga0209119_10521881	3300025860	Pelagic Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMYIETGEAVW
Ga0209533_10888373	3300025874	Pelagic Marine	MKLIPLWILTILLGGCFIGPVEDFVDQMDDQYFSDEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMYI
Ga0209534_100990333	3300025880	Pelagic Marine	MRLIPLIFLTSLLVGCFIGPVEDFVDQMDDQYFADEFNNVPTEIKPYEKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDGSVRK
Ga0209534_101042563	3300025880	Pelagic Marine	MKLIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGETVWQKDISENI
Ga0209534_102754442	3300025880	Pelagic Marine	MKLIPLWILTILLGGCIIGPVEDFVDQMDDQYFADEFNNIPTEIKPFSKKTSMKVLWENKIGDNEVNNL
Ga0209534_103907222	3300025880	Pelagic Marine	MRLIPLIFLISLFSGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYEKKATIELIWEKKVGDNDAHNLNLIFSEEF
Ga0209534_104347812	3300025880	Pelagic Marine	MKLIPLWILTLLLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETGE
Ga0209309_102759511	3300025881	Pelagic Marine	MKLIPLWILTLLLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIVATSDGNI
Ga0209309_103954732	3300025881	Pelagic Marine	MRLIPLIFLTSLLVGCFIGPVEDFVDQMDDQYFADEFNNVPTEIKPYEKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDGSVRKMQMA
Ga0209632_102633702	3300025886	Pelagic Marine	MKLIPLWILTLLLGGCFIGPVEDFVDQMDDQYFTDEFNNIPTEIKPFNKKTSIKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETG
Ga0209632_102710941	3300025886	Pelagic Marine	MKLIPIWILTIFLGGCFIGPVEDFVDQMDDQYFADEFTNIPTEIKPFNKKTSMKLLWENKIGDNEVSNLNLIFSDEFVIAATSDGNIRKMHIETG
Ga0209631_103159162	3300025890	Pelagic Marine	MRLIPLLFFTSLLVGCFFQPVEDFVDQMDDQYFADEFNNIPTEIKPYEKKATIELIWENKVGDNDAHNLNLVFSEEFIIAATSDGSLRKMQMAT
Ga0209631_104026612	3300025890	Pelagic Marine	MRLIPLIFFTSLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYEKKANIELIWENKVGDNDINNLNLIFSEEFVIAATSD
Ga0209630_102482641	3300025892	Pelagic Marine	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEIKPYGKKATIELIWENKVGDNDAHNLNLIFSEEFVIAATSDGSLRKMQIATGKTVWKKEISE
Ga0209630_104662671	3300025892	Pelagic Marine	MKFIPIWILTILLGGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPFSKKTSMKLLWENKVGDNEVNNLNLIFSD
Ga0209335_104549261	3300025894	Pelagic Marine	MRLIPLIFFTSLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYEKKASIELIWENKVGDNNVNNLNLIFSEEFVI
Ga0247569_10518961	3300026421	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNDIPTEIKPYEKKASIELIWENRVGDNDVNNLNLIFSEEFVIAVTSDGSLRKMQMATGETI
Ga0247591_10635721	3300026434	Seawater	MRLAPLIFLIFILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYEKKASIELIWENKVGDNDVNNLNLIFSEEFVIAATSD
Ga0228622_10946412	3300026479	Seawater	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKIGDNDANNLNLIFSEEFVIAATSDGSLRKMQIATGVT
Ga0228647_11478402	3300026505	Seawater	MRLIPLILLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEVKPYEKKASIKLIWENKIGDNDVNNLNLIFSEEFIIAATSDGSVRKMHMATGEAVWEKDIS
Ga0247590_10419423	3300026513	Seawater	MRLIPLIFLIFILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDVNNLNLIFSEEFVI
Ga0233397_10574241	3300028111	Seawater	MRLIPLILLTSLLFGCFIGPVEDFVDQMDDQYFADEFSNIPTEVKPYEKKASIKLIWENKIGDNDVNNLNLIFSEEFVIAATSDG
Ga0228634_10299343	3300028129	Seawater	MRLIPLIFITLLLSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDAHNLNLIFSQ
Ga0228619_11205042	3300028130	Seawater	MRLIPLIFLTSILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNDINNLNLIFSEEFVIAATSDGSVRKMQMATG
Ga0247572_10392221	3300028290	Seawater	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKIGDNDVNNVNLTFSEEFVIA
Ga0247583_10923582	3300028336	Seawater	MRLIPLVILTSFMFGCIVQPVQDFVDQMDDQYFADEFNNIPTEIKPYEKKASIDLIWENKVGDNNVNNLNLIFSEEYVIAATSDGSLRKMNM
Ga0228627_11333331	3300028414	Seawater	MRLIPLIFLIFILSGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASIELIWENKVGDNNINNLNLIFSKKFVI
Ga0307986_100425134	3300031659	Marine	MRLIPLIFLTSLLFGCFVGPVQDFVDQMDDQYFADEFNNIPTEIKPYNKKASIELIWENKVGDNDVNDLNLIFSEEFVIAATSDGSLRKMQITTGETIWEKEIS
Ga0315330_103136681	3300032047	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNNIPTELKPYEKKASLELIWENKVGDNDAHNLNLVFSEEFVIATTSDGSLRKMQMAT
Ga0315315_102751371	3300032073	Seawater	MRLIPLIFLTSLLFGCFIGPVEDFVDQMDDQYFADEFNNIPTELKPYEKKASLELIWENKVGDNDAHNLNLIFSEEFVIAGTSDGNLRKMQMATG
Ga0315321_103583912	3300032088	Seawater	MRLIPLIFLISILPGCFIGPVEDFVDQMDDQYFADEFNNIPTEIKPYDKKASVELIWENKVGDNDINNLNLIFSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters