3300003600: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003600
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091513 | Ga0008831
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173073952
• Sequencing Scaffolds: 35
• Novel Protein Genes: 35
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → Viruses → Predicted Viral	5
Not Available	16
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Borreliaceae → Borreliella → Borreliella bissettiae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003286	Metagenome / Metatranscriptome	496	Y
F004164	Metagenome / Metatranscriptome	450	Y
F004630	Metagenome / Metatranscriptome	430	Y
F011736	Metagenome / Metatranscriptome	287	N
F012582	Metagenome / Metatranscriptome	279	Y
F015265	Metagenome / Metatranscriptome	256	Y
F021863	Metagenome / Metatranscriptome	217	Y
F023637	Metagenome / Metatranscriptome	209	Y
F026538	Metagenome	197	Y
F027810	Metagenome / Metatranscriptome	193	N
F033048	Metagenome / Metatranscriptome	178	Y
F035962	Metagenome / Metatranscriptome	171	Y
F037260	Metagenome	168	Y
F042172	Metagenome	158	Y
F043154	Metagenome / Metatranscriptome	157	Y
F046020	Metagenome	152	N
F046847	Metagenome / Metatranscriptome	150	N
F047114	Metagenome	150	N
F051972	Metagenome	143	N
F057436	Metagenome / Metatranscriptome	136	N
F061392	Metagenome / Metatranscriptome	132	N
F063751	Metagenome	129	N
F063767	Metagenome	129	N
F066454	Metagenome / Metatranscriptome	126	N
F066842	Metagenome	126	N
F067831	Metagenome	125	N
F073643	Metagenome / Metatranscriptome	120	Y
F078263	Metagenome / Metatranscriptome	116	N
F084823	Metagenome / Metatranscriptome	112	N
F087741	Metagenome / Metatranscriptome	110	Y
F093903	Metagenome / Metatranscriptome	106	N
F100510	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26272J51733_1000370	All Organisms → cellular organisms → Bacteria → Proteobacteria	24705
JGI26272J51733_1001574	All Organisms → cellular organisms → Bacteria	8715
JGI26272J51733_1002788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	5643
JGI26272J51733_1004818	All Organisms → Viruses → Predicted Viral	3642
JGI26272J51733_1007314	All Organisms → cellular organisms → Bacteria → Proteobacteria	2638
JGI26272J51733_1007919	All Organisms → Viruses → Predicted Viral	2479
JGI26272J51733_1009079	Not Available	2222
JGI26272J51733_1010712	All Organisms → Viruses → Predicted Viral	1952
JGI26272J51733_1010791	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1941
JGI26272J51733_1013446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1617
JGI26272J51733_1014285	Not Available	1537
JGI26272J51733_1015111	Not Available	1467
JGI26272J51733_1015948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1400
JGI26272J51733_1015974	Not Available	1398
JGI26272J51733_1016556	Not Available	1358
JGI26272J51733_1018759	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1228
JGI26272J51733_1020572	All Organisms → Viruses → Predicted Viral	1143
JGI26272J51733_1021183	All Organisms → Viruses → Predicted Viral	1119
JGI26272J51733_1021934	All Organisms → cellular organisms → Archaea	1090
JGI26272J51733_1027901	Not Available	916
JGI26272J51733_1031521	Not Available	841
JGI26272J51733_1032675	Not Available	820
JGI26272J51733_1033688	Not Available	804
JGI26272J51733_1035609	All Organisms → cellular organisms → Archaea	774
JGI26272J51733_1042883	Not Available	683
JGI26272J51733_1045646	Not Available	656
JGI26272J51733_1050319	Not Available	618
JGI26272J51733_1051191	Not Available	612
JGI26272J51733_1056789	Not Available	574
JGI26272J51733_1057890	Not Available	567
JGI26272J51733_1057915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	567
JGI26272J51733_1058111	All Organisms → cellular organisms → Archaea	565
JGI26272J51733_1064536	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Borreliaceae → Borreliella → Borreliella bissettiae	530
JGI26272J51733_1065927	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	523
JGI26272J51733_1070398	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26272J51733_1000370	JGI26272J51733_100037015	F026538	MYKLNKFEDSYSITRLSDNASIPQAEGNRDYRQFLQDVKVNGLTIVEGADVIEPDYVA
JGI26272J51733_1001574	JGI26272J51733_10015741	F078263	MELLHDSDGLEGSLDCQLKRLEEKIETXQPVALMKXLHRIDDEIKHFKDVEITTNTVVSSVKEHXETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
JGI26272J51733_1002788	JGI26272J51733_10027884	F004164	MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIXEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26272J51733_1004818	JGI26272J51733_10048184	F046847	MPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNRASLDVNDRIKSTKTMAELRALQNEI*
JGI26272J51733_1007314	JGI26272J51733_10073146	F073643	MMIVNVKLESVETVEEFLARGNKIEKSEKVLGSKSLNLFSRYSANYRAGSGKTRMGKNGSGKARMSESYXXIKXLSAT*
JGI26272J51733_1007919	JGI26272J51733_10079193	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDXVXXSELXNXWNELTDYYLPYEGDKEFTGSNDFFSL*
JGI26272J51733_1009079	JGI26272J51733_10090796	F087741	MKITSDVXAELQKIRSAIDDAYNKLDVVMYDRVTAAKTTYKPSNPSEKITENFSYISEKLKFIQDESELVGEE*
JGI26272J51733_1010712	JGI26272J51733_10107122	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKSMRLQTEHL*
JGI26272J51733_1010791	JGI26272J51733_10107916	F021863	INRGNKIMARKKKKDTPFHIAHNYKQYELKDGTKFWAKDDPDAELYRKKMGEIK*
JGI26272J51733_1013446	JGI26272J51733_10134462	F011736	MENKNIFLMIFFYCTINLSYAKDLDTNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKXAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26272J51733_1014285	JGI26272J51733_10142851	F063767	RPVFCKLYPLVENKSNRLVMNNWGYLHCPKSQHYELDKIVEGKYHYKLKPKVRKHNKREELILDDEIDNVVHQIWLQSKDSIIQRYGQEYYNRIKNEMKQTIKHEFF*
JGI26272J51733_1015111	JGI26272J51733_10151113	F067831	MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVMPPLGLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKDYLLSQSYCEEFIQPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQT
JGI26272J51733_1015948	JGI26272J51733_10159481	F093903	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETV
JGI26272J51733_1015974	JGI26272J51733_10159744	F004630	KMNNQKLISEYYREDKAVAKIYRVITDMDGDHSYYSITYKDKDGVRLGTEDFPFKSLQYVEDAAENWTLGIKVLYG*
JGI26272J51733_1016556	JGI26272J51733_10165562	F042172	DKKISKETENTGKHDSKTFFIKELRIVNLEVKARVSSVKRDFLNKKIPLIVIKNIGSESKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
JGI26272J51733_1018759	JGI26272J51733_10187592	F061392	VVVKRLSMICAFFTVGIFLSLQTFAGESDKPDPTFRLNATLYPIDGGQLYIGXVNKDKXTFRXHLRHIGKDGKWVYYYASASAPVNEDGDVEADSAVASIEYPQYIASVIGNTFRKARVRVLFSHRGDGEGFFKEAGQVIFQECATKTFEA
JGI26272J51733_1020572	JGI26272J51733_10205721	F084823	MKENTVRKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAEKMVA
JGI26272J51733_1021183	JGI26272J51733_10211832	F084823	MKQNTLKKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAEKMVA
JGI26272J51733_1021934	JGI26272J51733_10219342	F066842	MNKFETKMLKLINEGSSAGGHGTGLGEIGDGWPDGLYTKRGERRVVGPASLTRGMTQIDFPASDNIYGGNGSLNNLKRAERDKAMVYRYLSGPEEYASIMANELRDDTPPLAPKQRMYGIHGFHRKQEYTIPPETSNFH
JGI26272J51733_1027901	JGI26272J51733_10279012	F051972	MASPIYYFTRSGCAWCTRMQPSIEXINXTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPSNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECEMMNKELKILKLQIKKLKRLK*
JGI26272J51733_1031521	JGI26272J51733_10315212	F027810	MNNEIQKVGIDAFNDLAKSHDAHVKEVEKLQEELNELNKLKLVDQHGELLLECRIGDENHRLLLEVGLNTILEKILKEGK*
JGI26272J51733_1032675	JGI26272J51733_10326751	F023637	NTTLPYRSRKGRYFSQHHKRNDIVGNKFVHQKDTSINERRFIDEVKGGMINTDEDGLADLNYNIVKREYLFNTEHEIIDFRCEQDIPNHVEI*
JGI26272J51733_1033688	JGI26272J51733_10336881	F003286	MAVQLLDKTIVMKPKRSSMVKVQKDVDFEENYDSESENFYGEPKADRFDEIIDLLKQGNIYGEKEEITLGAVDVPIEKQIAIDKASTKGLKSEEYANNSENKLDKLRKLRRGN*
JGI26272J51733_1035609	JGI26272J51733_10356091	F063751	RMYGIHGFHRKQEYTIPPETSNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWIDHRIGGRVDSREWKGNKLVDLLPKGKK*
JGI26272J51733_1042883	JGI26272J51733_10428832	F035962	MMDKLGLYINNLMTTVVDKEDKFFLRKLAFDELLKLKSDISDFLARYVDEFDGIPDELKEKDT
JGI26272J51733_1045646	JGI26272J51733_10456463	F037260	MSKKKKDVPFHMKHNYKQWTSDQGYTFWAKDEQDAKSYLEKTEGNLGSLKEVEVKDV*IYGRNFITLHSLSSC*
JGI26272J51733_1050319	JGI26272J51733_10503191	F046020	LFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCNKLSDLRGNDITRFPVNVPLPTPK*
JGI26272J51733_1051191	JGI26272J51733_10511911	F015265	FPDFKIKSSAMYPAHITKNPKLIEKNAIVNLNNVGLPVFLNPINDITPMMSPIKNPTRLSIFSNKNSNCI*
JGI26272J51733_1056789	JGI26272J51733_10567891	F033048	MIDKTIKLAGEYPSDFKPSTSIQEIQQHFEAYSFHNGRMIGGSKSGYSSQHPDELIVFNANVLMKDIGKVWHGDLNLTEDYLVLKDIAKSLNT
JGI26272J51733_1057890	JGI26272J51733_10578901	F057436	MTRVNYETLGKLIDIDEKDLEFERVTNSIDVVDREYGVEVIFDYYRRHGFPHYKIRED
JGI26272J51733_1057915	JGI26272J51733_10579152	F043154	TGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNXHPTHGVATYLTAIKVADDHEPGYKGANAEISEFLTA*
JGI26272J51733_1058111	JGI26272J51733_10581111	F100510	NAKWYNKYFAIPFQRIIQAIKDFPSEVKWFYQRGSRGWSDRSAWSIDTWLVDNLIPMLERLKIDNHSTPMSMFKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYNYKDKKLTKRLTKSSQRSFELIGKHLFSLWD*
JGI26272J51733_1064536	JGI26272J51733_10645361	F078263	LKRLEEKIDTSQPIALLKDLHRQDDEIRHFKNVETTMNTVASSVKELDGTIRKLEERTGSKFTEMTSQIKVTEAMVADKHKGLISKINNINSRIDNLEKKIDFAVRELKSETRKTSFLRKLLWLD*
JGI26272J51733_1065927	JGI26272J51733_10659271	F047114	MPTTWSTATTSWSLATYTWSDFSIAYELSLIGEVGGRYKRQDIYADLFKDRTKKKKVIEXIMKVKSNQIKQKVEIPLNTQIALSDIDMVIQEVLNKPMVNINVA*
JGI26272J51733_1070398	JGI26272J51733_10703982	F012582	MTDFHKKLKHLSATMLHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDXKXXKKEMEMCNQLYEYYGNVYVKF*