Sample 3300003599

Basic Information
IMG/M Taxon OID	3300003599 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0091511 \| Ga0008829
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_10m_DNA
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003599 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046785 | Gp0091511 | Ga0008829

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_10m_DNA

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	150353296
Sequencing Scaffolds	25
Novel Protein Genes	27
Associated Families	27

Dataset Contents

Total Genome Size

150353296

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	14
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria

Not Available

All Organisms → Viruses → environmental samples → uncultured marine virus

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F004164	Metagenome / Metatranscriptome	450	Y
F008648	Metagenome	330	Y
F011256	Metagenome / Metatranscriptome	293	N
F017732	Metagenome / Metatranscriptome	239	N
F027853	Metagenome / Metatranscriptome	193	Y
F029271	Metagenome / Metatranscriptome	189	N
F032816	Metagenome	179	Y
F033048	Metagenome / Metatranscriptome	178	Y
F035724	Metagenome	171	Y
F040845	Metagenome / Metatranscriptome	161	N
F042172	Metagenome	158	Y
F043154	Metagenome / Metatranscriptome	157	Y
F055781	Metagenome / Metatranscriptome	138	N
F058538	Metagenome / Metatranscriptome	135	N
F058917	Metagenome / Metatranscriptome	134	Y
F059474	Metagenome / Metatranscriptome	134	Y
F062497	Metagenome	130	N
F066454	Metagenome / Metatranscriptome	126	N
F067831	Metagenome	125	N
F070155	Metagenome / Metatranscriptome	123	N
F075397	Metagenome / Metatranscriptome	119	N
F079237	Metagenome / Metatranscriptome	116	Y
F083344	Metagenome / Metatranscriptome	113	N
F083345	Metagenome	113	N
F093903	Metagenome / Metatranscriptome	106	N
F098166	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI26270J51728_1003707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	4330	Open in IMG/M
JGI26270J51728_1005286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	3274	Open in IMG/M
JGI26270J51728_1005999	All Organisms → Viruses → Predicted Viral	2981	Open in IMG/M
JGI26270J51728_1007777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2447	Open in IMG/M
JGI26270J51728_1013648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1557	Open in IMG/M
JGI26270J51728_1013952	All Organisms → cellular organisms → Bacteria → Proteobacteria	1527	Open in IMG/M
JGI26270J51728_1015976	All Organisms → Viruses → Predicted Viral	1365	Open in IMG/M
JGI26270J51728_1017650	All Organisms → Viruses → Predicted Viral	1248	Open in IMG/M
JGI26270J51728_1021469	Not Available	1060	Open in IMG/M
JGI26270J51728_1025750	All Organisms → Viruses → environmental samples → uncultured marine virus	915	Open in IMG/M
JGI26270J51728_1030815	Not Available	797	Open in IMG/M
JGI26270J51728_1032089	Not Available	772	Open in IMG/M
JGI26270J51728_1032788	Not Available	760	Open in IMG/M
JGI26270J51728_1035403	Not Available	717	Open in IMG/M
JGI26270J51728_1036792	Not Available	698	Open in IMG/M
JGI26270J51728_1038579	Not Available	674	Open in IMG/M
JGI26270J51728_1041672	Not Available	637	Open in IMG/M
JGI26270J51728_1042264	Not Available	631	Open in IMG/M
JGI26270J51728_1045288	Not Available	601	Open in IMG/M
JGI26270J51728_1047584	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
JGI26270J51728_1052804	Not Available	541	Open in IMG/M
JGI26270J51728_1053952	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
JGI26270J51728_1057621	Not Available	511	Open in IMG/M
JGI26270J51728_1058983	Not Available	503	Open in IMG/M
JGI26270J51728_1059115	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26270J51728_1001569	JGI26270J51728_10015698	F017732	MHQFILNVIFLFLLTGCASKGYSIDEIFEDGAEIDSTPEDSIKYTCNQNKYFYIQYIGDEKKSLWIIFPKNEIKLYQTEISNVFSNGITKLIFNEQTTTVKKDGSIFYSECXKQT*
JGI26270J51728_1003707	JGI26270J51728_10037074	F004164	MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIVEGNQIKGYSVFARHIQIKNYXVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26270J51728_1005286	JGI26270J51728_10052861	F042172	NVLKDNIQSYQSSDSNPSRDKKISKETENTGKHDSKTFFIKELRIVNLEVKARVSSVKRDFLNKKIPLIVIKNIGSESKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
JGI26270J51728_1005999	JGI26270J51728_10059996	F059474	MAFKAIXRSETLEVVSTDDPAIDLANSDVSAYIDSHDLKHLSFKAGEEPTTFHLGTITFMKFAEIKDKHISFDLGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26270J51728_1007777	JGI26270J51728_10077774	F093903	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSXEFVIAATSDGSVRKMKINS
JGI26270J51728_1013648	JGI26270J51728_10136481	F070155	MNLEYTQMQSNLFYLKNNFTLETLVSWGFISQLLLVIMVIGMAFLVENLIRKKLKKNHAKSLKQKDIFKIFRPILMLSVLFAAMYFMREGELEWRLLYFANSVLIILVFVRLAIILTRHILKPGPWLRAFENIFAGIVVLGYLALQFGIVKQIQDRLHSIKFEIGKES
JGI26270J51728_1013952	JGI26270J51728_10139522	F066454	MSIRLDVLILINSGVTDRSEIMEXLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVTRSELINLWNELTDYYLPYEGDKEFTGSNDFFSL*
JGI26270J51728_1015976	JGI26270J51728_10159765	F033048	MIDKTIKLAGEYPSDFKPSTSIQEIQQHFEAYSFHNGRMIGGSKSGYSSQHPDELIVFNANVLMKDIGKVWHGDLN
JGI26270J51728_1017298	JGI26270J51728_10172981	F079237	MSANGISHQALKRDRQDQKLAIASAKMQGKTVATDGTISGSVDSSKPYYRENNT
JGI26270J51728_1017650	JGI26270J51728_10176503	F058917	MNKLLKALEKEGTDIRSADMVVGGKIHHVYYRVMSGQDHDNALELSKKVKTVKEADGSTTDLTYYDDGLLRAHIIYFQLLTKEGERVFNDLVKVQWIKDTITYESSSYLSALMGLKSVSDIIEEQQEALKKMNG*
JGI26270J51728_1021469	JGI26270J51728_10214692	F029271	MSKLSDLQDIKELLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNITAYRRFGAQR*
JGI26270J51728_1025750	JGI26270J51728_10257503	F083345	DVPDEIKDKAKGNTWEVSDEDSDALVQIGVVSMIKKGLKVAEEEDYYAKLQKLADTDEWESDEDKEGM**
JGI26270J51728_1030815	JGI26270J51728_10308151	F058538	VYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKRSLHT
JGI26270J51728_1032089	JGI26270J51728_10320892	F098166	MNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDRLGEWLGKKGLTGVYTDIEEDDFIECNDFMFTSSDIDINSDNHLTFIRLLK*
JGI26270J51728_1032788	JGI26270J51728_10327881	F083344	MITTIEFRNDDLTMLRGVMACTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHFDGELPERGVIIPSIKIPFSVHTVIITIDDNKITVDKYSKQGKTTEVXQXIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
JGI26270J51728_1035403	JGI26270J51728_10354032	F035724	MIFKYPTLASPTTTLTFNXXPESPYEREVIKHNSSVXMEDGSFYVYSRSVTNYRYTISVVLTSESERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELHISEIFKDRMYRATFNLIQTA*
JGI26270J51728_1036792	JGI26270J51728_10367921	F067831	PSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVMPPLGLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTQ
JGI26270J51728_1038579	JGI26270J51728_10385792	F075397	MKYWHKRVDVVSFFDLDQENQDIELKDDDNAEELTFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
JGI26270J51728_1041672	JGI26270J51728_10416721	F043154	MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNEHPTHGVA
JGI26270J51728_1042264	JGI26270J51728_10422641	F032816	RDYFKYKDRPKKKNEAELTPCCNQSVDHKVLNVNRKEDWESIQDYIERNLRDYSNTESITPVSCKTCGRLLKYISKLKDDKSLWR*
JGI26270J51728_1045288	JGI26270J51728_10452881	F062497	TDIKHNIDQIGVLQKEIDEIQKKLKPLKKEYGELIDNVLPILSKLGKEQMKTRNYIFKIIRKGYERQSFQYKEGFNKALGKVNNNIKKILEQILDDTKKMVDVKPKFQISPINEGFTDWLKSFTRKVLKNIIKPMKSVVSANKDLRKLI*
JGI26270J51728_1047584	JGI26270J51728_10475842	F027853	MKKWFYERSKFSEFKSNTTYHKLLEMSVDDFNEWARLLRQEVTTQWDEYGTPPVIGKDEDGIIKKFKKLKDNPCNYLIED
JGI26270J51728_1052804	JGI26270J51728_10528042	F055781	NKNIKTIYPVALSGYVYKNKKMWYDRLNDRHKFDGDFKVVQSDYPYQHKLKLDESLPLDQTYEAKAWDWMVKNIEPSENVLFWDVGIKEYDLSYIEPIKWHKSEYEMIIDRELRRKHEQVKHNFF*
JGI26270J51728_1053952	JGI26270J51728_10539521	F040845	KLNEMDDDKRAFLMLKIYGQSWGVNMGKVFSGINKGKPTMIKKGLKEIKILNKKIEEMIEDLV*
JGI26270J51728_1057621	JGI26270J51728_10576213	F003091	MTLKPMKPITKPGEGTPRQKYMSQEVFLEERYQISAGLKGPKRLDNETHEDFVLRRNAESGLLKEYLRGVWVIDGNSTALDK
JGI26270J51728_1058983	JGI26270J51728_10589831	F011256	MSLENIFGAVVLLGIGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYLTMX
JGI26270J51728_1059115	JGI26270J51728_10591151	F008648	VFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003599: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_10m_DNA

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences