Sample 3300003699

Basic Information
IMG/M Taxon OID	3300003699 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0069861 \| Gp0055817 \| Ga0003070
Sample Name	Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	28611227
Sequencing Scaffolds	26
Novel Protein Genes	30
Associated Families	29

Dataset Contents

Total Genome Size

28611227

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Latescibacteria bacterium SCGC AAA252-D10	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia paraffinivorans	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Latescibacteria bacterium SCGC AAA252-D10

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia paraffinivorans

Ecosystem Assignment (GOLD)
Name	Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Ecosystem Assignment (GOLD)

Name

Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → anthropogenic contamination feature → contaminated water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → anthropogenic contamination feature → contaminated water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-73.604444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

S. Glens Falls, New York, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-73.604444

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000329	Metagenome / Metatranscriptome	1287	Y
F005048	Metagenome / Metatranscriptome	413	Y
F005374	Metagenome / Metatranscriptome	403	Y
F005905	Metagenome / Metatranscriptome	386	Y
F008500	Metagenome / Metatranscriptome	332	Y
F011643	Metagenome / Metatranscriptome	288	Y
F014210	Metagenome / Metatranscriptome	265	Y
F021737	Metagenome / Metatranscriptome	217	Y
F025432	Metagenome / Metatranscriptome	201	Y
F028190	Metagenome / Metatranscriptome	192	Y
F029638	Metagenome / Metatranscriptome	187	Y
F030637	Metagenome / Metatranscriptome	184	Y
F031882	Metagenome / Metatranscriptome	181	Y
F041780	Metagenome / Metatranscriptome	159	Y
F043243	Metagenome / Metatranscriptome	156	Y
F048148	Metagenome / Metatranscriptome	148	Y
F048822	Metagenome / Metatranscriptome	147	Y
F052605	Metagenome / Metatranscriptome	142	Y
F055278	Metagenome / Metatranscriptome	139	Y
F057498	Metagenome / Metatranscriptome	136	Y
F061584	Metagenome / Metatranscriptome	131	Y
F067152	Metagenome / Metatranscriptome	126	Y
F069879	Metagenome / Metatranscriptome	123	Y
F081396	Metagenome / Metatranscriptome	114	Y
F082737	Metagenome / Metatranscriptome	113	Y
F086140	Metagenome / Metatranscriptome	111	Y
F091056	Metagenome / Metatranscriptome	108	Y
F104572	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0003070J53073_1000170	Not Available	809	Open in IMG/M
Ga0003070J53073_1000214	Not Available	510	Open in IMG/M
Ga0003070J53073_1001173	Not Available	783	Open in IMG/M
Ga0003070J53073_1003230	Not Available	1011	Open in IMG/M
Ga0003070J53073_1003353	Not Available	589	Open in IMG/M
Ga0003070J53073_1004598	Not Available	901	Open in IMG/M
Ga0003070J53073_1004993	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1171	Open in IMG/M
Ga0003070J53073_1005304	Not Available	540	Open in IMG/M
Ga0003070J53073_1006251	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	656	Open in IMG/M
Ga0003070J53073_1008964	Not Available	914	Open in IMG/M
Ga0003070J53073_1010359	Not Available	560	Open in IMG/M
Ga0003070J53073_1012464	Not Available	889	Open in IMG/M
Ga0003070J53073_1016442	Not Available	709	Open in IMG/M
Ga0003070J53073_1021393	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	2155	Open in IMG/M
Ga0003070J53073_1022353	Not Available	617	Open in IMG/M
Ga0003070J53073_1026576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1454	Open in IMG/M
Ga0003070J53073_1029653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
Ga0003070J53073_1029881	Not Available	720	Open in IMG/M
Ga0003070J53073_1030117	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Latescibacteria bacterium SCGC AAA252-D10	702	Open in IMG/M
Ga0003070J53073_1030898	Not Available	518	Open in IMG/M
Ga0003070J53073_1031470	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	681	Open in IMG/M
Ga0003070J53073_1031830	Not Available	665	Open in IMG/M
Ga0003070J53073_1032378	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
Ga0003070J53073_1038742	Not Available	689	Open in IMG/M
Ga0003070J53073_1042659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia paraffinivorans	648	Open in IMG/M
Ga0003070J53073_1063251	Not Available	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0003070J53073_1000170	Ga0003070J53073_10001702	F104572	MRPIALLAAGNGVGEPAAHRKVERPMSVKGKESVANSHSRYYP
Ga0003070J53073_1000214	Ga0003070J53073_10002141	F082737	HIQRAGRISRLAPRSRYFSVSDSMLGGTPASLPVRSQNLEADFHSPTTTSLLPDDRGGVRVPALPLRFCDTISVSPVRSGLHPRPVSRTAWDFCNQNPLPSDPAPLLPAALNRRSPSGHLAPPDQSTRSRWPTGNLPSETPDFPSLPTGGRIRYQHQRIIVPAPLRPCQ
Ga0003070J53073_1000218	Ga0003070J53073_10002181	F000203	RPNRDKWGMGVRQALFPAPALGAHLAVAAGFPTLFSTASGVTGLVAGPSNPVSGLNFE*
Ga0003070J53073_1001173	Ga0003070J53073_10011731	F052605	KWTAAGKINVVRFRIIPGDWGKVGSGWLTRLLLTGPQGAAEAEFTSSSGGVRTSSNANEGLGSEER*
Ga0003070J53073_1001336	Ga0003070J53073_10013362	F030637	GPPAPSSPLRRFEDSIRCPVPCRQATVISHEVGCSPECCEHRPCRLIGLPAATSTLRFPARPGGSTSCVVPRFLAKTGSSSRELGLLFRVRTVSNLPLARMRRAPSLGSRSQSRYQLRRSTCERGSQPHSMFRPRRFARPRRLTLSTTSWACFIPQPRPGLTFQGFVPTAQPNRLVDGPCPPVVDHHLLPPRCRVDSRSGDLAFRALIRVAIRSNRRECLASCDARSPLRLYSFGFISKHLGGAFTPPPLVAFAARSCV*
Ga0003070J53073_1003230	Ga0003070J53073_10032301	F025432	TCSSSRRARVTRPLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGTPAGGQGQFIHTGVAAWVKDRVVVQLAVAPGVDNLDYKRMTYGVVLGFLPMNTDGMWLMPTFSMLAGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNNQSLRLDQNWRNGWSWNLQWHFL
Ga0003070J53073_1003353	Ga0003070J53073_10033532	F043243	MVVRRTDSRSERAKGRYGKPAPDREYEQADLVALIRCRRKAVAGSQQESARETCLQNSVPCMSAESEAVNRVTWN
Ga0003070J53073_1004598	Ga0003070J53073_10045981	F055278	YHRYCFGDPALPLVLTSAVRFSFSGLDWRLFRLPVTSSRRASPSFRVLPSNTYPAATASESSHGLWLPTALEESEVHCSRASPTRYVPPSGFGYPLDGFLPRIPCRSCFVPAALLGFPLRRFPLPKGFRGVSAKKNPHTVNLRVTPAPKCQTGQAGLGFWAHTFRKCLANAGFLSRRPPAPPLGFAPSGPSCENLDRDFSQPPLTRFADLTITHQIHRRPRVSVGSRLASTGLAPKYTPAETTLLGFPHRPHPGHSNTTPPGLLSSPRTGPYITADSPVLFGR*
Ga0003070J53073_1004993	Ga0003070J53073_10049932	F021737	MRWLRGAVVLAALGVGVAQVASARVPAYVRQTGLVCNQCHVTWTPTPDLTFTAVKFRMNGYRTPWVAEKIEAGQEGALGGRRLLLGVTGYLSYHMRSNLFQQSKGASDPTLPEPTAGPVT
Ga0003070J53073_1005304	Ga0003070J53073_10053041	F005048	LRFEHTTPKAEDCLQDFVVETFASAKADDGLIALVVEPRHVERQGLVRTLRELGRRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGALS*
Ga0003070J53073_1006251	Ga0003070J53073_10062512	F014210	MRWLKGAVVLAALGVGIAQVASARVPAFVRQTGLVCNQCHVTWTPTPDLTFTAVKFRMNGYRTPWVAEKIEAGQEGALGGRRLLLGVTGYLSYHMRSNLFQQSKGASDPTLPEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNP
Ga0003070J53073_1008964	Ga0003070J53073_10089642	F061584	GCLTHRLPFRGSRTRCRVPRNCHQTAVASHEVGCTTKCCKRRSCKRIGLLAPTMTSLFPESLCGVTPPPAPVPLRDRVHPSMRLPLLQSTNCFEPAPCVATRGRLSWGFLPHRDISARSPLPSELPMSRPNVPPSAFLTPSTACSSMHLAGLFHPAATSGIHLPGVISRYPAGPPRRRPVPSCRSSTRPYRRVAPTAPDRADPPTGS*
Ga0003070J53073_1010359	Ga0003070J53073_10103591	F041780	VAACSPTGMHGQNTAFMTGLNSLCSPRPPFGGSASTLWAQPARHSNRNRNLETAFLLTCGDFPYPELRDKLKRSQPASSISLPCPIRIRSVLNSLPDAFGFRRGHGHKTRFPLAARQSRPILEPPLPFRVSPPPDHNAQSDSDREVYLGKTPDIPLLPERINE*
Ga0003070J53073_1012464	Ga0003070J53073_10124641	F081396	ERDLVAGSKGSEAGQEPRAGRSISGESDQAPDRRTLKIIIESDCDELGERSWAAPAVTPLVGFGERHPEEVNPRRGSDPVDG*
Ga0003070J53073_1016442	Ga0003070J53073_10164421	F008500	DVIVEDSDILLDTNQNNFRAITSVSCSNCHASGFIPVVDEVREIALQNAREIGLDRDEVEQLEGIYVSPQEFSRQVQEDSQGFYQRALQLADLPIQGGDPVSSVFLRFDQDLRIADAAGDLGLTPDDLADNLDLLDPVLSVLDQGTLDRDDFTNVYIDSLCRLSTPLENQPDVAVCDAAAALLDQ*
Ga0003070J53073_1021393	Ga0003070J53073_10213933	F028190	MANMTVKKFDGTTDIVFDALSPSAGDNVPAVWRQDTGNAAGLPVGLRSMVRMTTKDNGPKTARQVKLTFDFPYAVQDSTTTLYSAKDRVHGEVMFTVPVAIPATWINEAIAQAFNLIDHALIHSSAQAGYAPT*
Ga0003070J53073_1022353	Ga0003070J53073_10223531	F011643	MRPTARGHDSAGESRYGSAVRDNPLKGKPWTWQRDETSPQRLEAEQTLEDVRNVAEGT*
Ga0003070J53073_1026576	Ga0003070J53073_10265761	F048148	MMLKVAKLGIAIAAVLAWIVPAAYAGVPDIAQSFYVPQAGSTTAPLEGTSSPNPSFRFFRACPNNDGGASLPNSARVKVVVRDVNGTGIAGIAAADICLLFNGGTPAQLFSGVGADSIVANAQYNQAPLCPDVRCVQADDQTDATGTAFITFTGSTAGSPGVGSRNPLRKWGHYDTEIPVYVLGFKISGRLTTASANGTYTLRIKNFDHTGGLGTALNQGETVTSADFNAVAIGINVDNAISYWRDFDYTGGVGAVGVTDFNAISLHVGHDCDSPNNP*
Ga0003070J53073_1029653	Ga0003070J53073_10296531	F005374	SNRARGHAMRLLRLSAVALSIVVAGFSAGAYAQVRTTPAGKLFFEGDIVRHALDGQQGPFCVLQNQYKRGEAVAWRIRVQKPDGTPADATYLKSVEVQLGNGQKLAAHYGGHGMPPTDFFWSLFWTIPGNFPTGSLGYKVNATMQDGSMVTWEPFTRATTQLMVIAGDPIPAASKQ*
Ga0003070J53073_1029881	Ga0003070J53073_10298811	F067152	MAGVPSAANSTTPGLISLMGSTAGVADAIVFAPPATASTQPTFTVIVRDLANNPLSGASVVVDLSGCTELALCDDQLDANALVTCISKTTRKFTDGLGAVTFTVLGGGNGNPATTLLGGGKIFANGTLIASPTVCAYDLDGALGAGAGDLSKFLGDFASANNYGRSDFDGSGTLGAGDLSRWLTVFALAGSQSSCATACP*
Ga0003070J53073_1030117	Ga0003070J53073_10301171	F031882	PRGIFVMGDGFGQAEKASAINDPAHNLFLTDKLGLIFRSASYQTLSGNLNDCADVLTTVALTATSDAYGVSNFCTWSNDVFQKNPSLAETAEGAFYENVGLNGPYVSDVVKTAVPLRNWVAATAGYDIEHLFSRYCDTDNGRLAYYYYMLNKVFTGVCQITGAPAVTLDTPQGGRSYTNFMKIGNSVMKQGPSSVRFGVAKAGRVQVSIYDVTGRKIKNLADRVFPAGEHTLT
Ga0003070J53073_1030898	Ga0003070J53073_10308981	F005048	TTSVDTSSVGLRFEHATPRAEDCIQDVVVEAVARAHMGNSHVALVIEPRPAIRQALVRTLRELGQQAIGVATALDAVQLLVEEGERIDTAFIEAESTSLKTDELVEFLTHNHPRVRRVLMGDSAHIQASWLAEATGEVHALLETPCNRDALHRLLSRIESVPVDAALS*
Ga0003070J53073_1031470	Ga0003070J53073_10314701	F057498	ESIFESPFDFAEGGTEAIFTLENGLFGFIIADADGLIVEDSDILLDTNQNNFRAVTSVSCSNCHAQGLIPVVDEVREIALANARTSGLNADEVEQLRNIYPTAAEFARIVEDDSRSFYQGALTRARVPTEGVDPMSAVFFRFDQDMRLEDAAGDLGLTADELDNDLNILNPALQVLNEGSVDRDDFTQFFVDSLCRLQIVGDNQVDPDLCAAVDANGGIVP*
Ga0003070J53073_1031830	Ga0003070J53073_10318301	F029638	APGSFAGSLIGQVIPATATVGTRIQCVPSNVNGFNGSTITIRKIDQFGQPLTAGFSIQQGPFWVEVARVSLGSTLASNPCATDGTQGSFNITGAGTSCANIGVITPAPFLSGLPAGQYRVVEVSGPNSYCTLVQVYNGNQAQNQSNTSAYNSGLLTQPVTLNLPDANIYDLQLTFVNSCVTPGGPSTATSQIAVVIGGSTPGLVNTSNIEISPAPGSDDDA
Ga0003070J53073_1031893	Ga0003070J53073_10318931	F091056	MGIMAAIMVFGMAVPAFANGSAVDQFSAVKYIRNLSDLAAQYRDHGLSLQLDGHNYEWLIFSDSCVRQNIEAELVVLGRSREHIIDPLSWQLHVDNLNLTIEQINTISDELGTYNFYPNEDKIVSNIAKKANEGTSVLGKITDELGRGEERNYADLATFGEKLWMIGNDLICLVKDLDYENWTALYSGDLCAGE
Ga0003070J53073_1032216	Ga0003070J53073_10322161	F069879	IGVFLRHSDNGSLAGVRFAIPLTLPKELPPWRVRPRLPDLYAYEQRTTVFTDRNVIRSDIGRELNTGHAVERVYWNRDRLYPAYIRQHVDTLKQAVRRWIDDAL*
Ga0003070J53073_1032378	Ga0003070J53073_10323783	F000329	MKGRTMVTDQEAQGYAGTSLPAGEPVTLVIDEERFFGWVAAAPAHSLACVAIEFKRGSHRVQERIPVENIQRLRDYLQAHPELRQTQAHGAPLRHQ*
Ga0003070J53073_1038742	Ga0003070J53073_10387421	F048822	MRLIAFVLAALLMVVSGPAAAQWKEYGFANQGFAIAFPADPNIEEVAMFEASPGKMVPATIYSLRHNNSLLKVTVIDGRDANLNEDAVVRHHVAKVTQGGRVTFDFPHRIYRIYGRQMSVARDNQGSVTQAVFFFANERLYLVESTRMRGGDDVDLIKFQQSLTFDRNVKNRTEQQMAAIVAACKGGVAGNDRPGNPAGLDDPRCTRD
Ga0003070J53073_1042659	Ga0003070J53073_10426591	F005905	LPSANILDLQLTFVNSCVVPGGPSTSTSQIAVVIGGSTPGLVNTSNVEIVPAPGSDDDARLDIRIRDSASIPIPNAHVTVLIDKGALGLRRDYTSFPNSGYDVIEPYPQATNYASPFSGDTCDQANNGWWTQSATSGGYSWPFLTTSRQQSDGYTNFEGILSACVYVDTTLAPGTTPGKINIQAIVESPGQGGLYSTGSYVNNPLNGVNPYYPLGN
Ga0003070J53073_1063251	Ga0003070J53073_10632511	F086140	MASGTTQQVVDYLKANPDVAEKAMDYVKSHPGDVKSALKEVASQRGWDLSQIDVAALTKELGDIIPH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003699: Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences