NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F086058

Metagenome / Metatranscriptome Family F086058

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F086058
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 63 residues
Representative Sequence MATYRAYRVDSRRHIKSAQWLEAPNDAAAKDQAEELCEEGAPTIELWQAARLVDEIDCADED
Number of Associated Samples 86
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 83.78 %
% of genes near scaffold ends (potentially truncated) 20.72 %
% of genes from short scaffolds (< 2000 bps) 82.88 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (90.090 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere
(12.613 % of family members)
Environment Ontology (ENVO) Unclassified
(67.568 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(72.973 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.00%    β-sheet: 33.33%    Coil/Unstructured: 56.67%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.70
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF03055RPE65 31.53
PF04993TfoX_N 15.32
PF02810SEC-C 13.51
PF07516SecA_SW 9.91
PF01494FAD_binding_3 3.60
PF14864Alkyl_sulf_C 3.60
PF00072Response_reg 1.80
PF01212Beta_elim_lyase 1.80
PF02899Phage_int_SAM_1 1.80
PF07517SecA_DEAD 1.80
PF00440TetR_N 1.80
PF13305TetR_C_33 0.90
PF00724Oxidored_FMN 0.90
PF07589PEP-CTERM 0.90
PF12802MarR_2 0.90
PF12728HTH_17 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG3670Carotenoid cleavage dioxygenase or a related enzymeSecondary metabolites biosynthesis, transport and catabolism [Q] 31.53
COG3070Transcriptional regulator of competence genes, TfoX/Sxy familyTranscription [K] 15.32
COG0653Preprotein translocase subunit SecA (ATPase, RNA helicase)Intracellular trafficking, secretion, and vesicular transport [U] 11.71
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 7.21
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 3.60
COG1167DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domainTranscription [K] 3.60
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 3.60
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 3.60
COG1003Glycine cleavage system protein P (pyridoxal-binding), C-terminal domainAmino acid transport and metabolism [E] 1.80
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 1.80
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 1.80
COG3033TryptophanaseAmino acid transport and metabolism [E] 1.80
COG4973Site-specific recombinase XerCReplication, recombination and repair [L] 1.80
COG4974Site-specific recombinase XerDReplication, recombination and repair [L] 1.80
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 1.80
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 1.80
COG4992Acetylornithine/succinyldiaminopimelate/putrescine aminotransferaseAmino acid transport and metabolism [E] 1.80
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 1.80
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 1.80
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 1.80
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 1.80
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 1.80
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 1.80
COG0112Glycine/serine hydroxymethyltransferaseAmino acid transport and metabolism [E] 1.80
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 1.80
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 1.80
COG19022,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) familyEnergy production and conversion [C] 0.90
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 0.90

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms90.09 %
UnclassifiedrootN/A9.91 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459012|GOYVCMS02IKSRQAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium547Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101333616Not Available622Open in IMG/M
3300005258|Ga0074071_1066220All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005327|Ga0070658_10087421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp.2565Open in IMG/M
3300005327|Ga0070658_10361625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1243Open in IMG/M
3300005327|Ga0070658_10571519All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300005327|Ga0070658_10773774All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter834Open in IMG/M
3300005327|Ga0070658_10905400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria767Open in IMG/M
3300005339|Ga0070660_100212540All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1571Open in IMG/M
3300005355|Ga0070671_100539906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1005Open in IMG/M
3300005364|Ga0070673_101959068All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300005456|Ga0070678_101964065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria553Open in IMG/M
3300005529|Ga0070741_11298935All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria609Open in IMG/M
3300005535|Ga0070684_100662062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.972Open in IMG/M
3300005535|Ga0070684_101149642All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria730Open in IMG/M
3300005537|Ga0070730_10155868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.1546Open in IMG/M
3300005538|Ga0070731_10257279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1159Open in IMG/M
3300005539|Ga0068853_101968383Not Available567Open in IMG/M
3300005544|Ga0070686_101304774All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria606Open in IMG/M
3300005548|Ga0070665_100570955All Organisms → cellular organisms → Bacteria1144Open in IMG/M
3300005548|Ga0070665_100774424All Organisms → cellular organisms → Bacteria → Proteobacteria972Open in IMG/M
3300005564|Ga0070664_101249852All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria701Open in IMG/M
3300005586|Ga0066691_10152997Not Available1328Open in IMG/M
3300005614|Ga0068856_100518132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1214Open in IMG/M
3300005616|Ga0068852_101065608All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium828Open in IMG/M
3300005616|Ga0068852_101392661All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria723Open in IMG/M
3300005617|Ga0068859_102137076All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300005618|Ga0068864_100286917All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1538Open in IMG/M
3300005618|Ga0068864_101096715All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria792Open in IMG/M
3300005618|Ga0068864_102271241All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria549Open in IMG/M
3300005719|Ga0068861_101571715All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria647Open in IMG/M
3300005841|Ga0068863_101455743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium693Open in IMG/M
3300005844|Ga0068862_100213636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter1744Open in IMG/M
3300006028|Ga0070717_10512274All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1085Open in IMG/M
3300006173|Ga0070716_101312048All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.585Open in IMG/M
3300006237|Ga0097621_101064986All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300006237|Ga0097621_101885421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.570Open in IMG/M
3300006881|Ga0068865_100000885All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria16967Open in IMG/M
3300009093|Ga0105240_10008316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium14850Open in IMG/M
3300009093|Ga0105240_10010746All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria12843Open in IMG/M
3300009093|Ga0105240_11760465All Organisms → cellular organisms → Bacteria → Proteobacteria646Open in IMG/M
3300009098|Ga0105245_13289955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.500Open in IMG/M
3300009176|Ga0105242_12021011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.619Open in IMG/M
3300009177|Ga0105248_10000279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae60271Open in IMG/M
3300009551|Ga0105238_12884753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.517Open in IMG/M
3300009553|Ga0105249_10362579All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1471Open in IMG/M
3300009553|Ga0105249_12437690All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.596Open in IMG/M
3300010371|Ga0134125_11052842All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.891Open in IMG/M
3300010373|Ga0134128_10405361All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1522Open in IMG/M
3300010375|Ga0105239_10424314All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1507Open in IMG/M
3300010375|Ga0105239_12291123All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300010864|Ga0126357_1125724All Organisms → cellular organisms → Bacteria1326Open in IMG/M
3300010869|Ga0126359_1568515All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.534Open in IMG/M
3300012212|Ga0150985_122246433Not Available669Open in IMG/M
3300012682|Ga0136611_10800221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium567Open in IMG/M
3300012973|Ga0123351_1045745All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum2097Open in IMG/M
3300012977|Ga0134087_10693108Not Available539Open in IMG/M
3300013296|Ga0157374_11415191All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria718Open in IMG/M
3300013297|Ga0157378_11885316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria647Open in IMG/M
3300013306|Ga0163162_11754587All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300013308|Ga0157375_10785935All Organisms → cellular organisms → Bacteria1101Open in IMG/M
3300013308|Ga0157375_11530826Not Available788Open in IMG/M
3300014325|Ga0163163_10041446All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum4502Open in IMG/M
3300014969|Ga0157376_11626061Not Available680Open in IMG/M
3300015202|Ga0167663_1135435All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae551Open in IMG/M
3300018433|Ga0066667_11325024All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300018468|Ga0066662_12168303All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae583Open in IMG/M
3300018920|Ga0190273_12289320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium510Open in IMG/M
3300020034|Ga0193753_10038587Not Available2635Open in IMG/M
3300020060|Ga0193717_1132338All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300021170|Ga0210400_10000081All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria129124Open in IMG/M
3300021404|Ga0210389_10270393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1331Open in IMG/M
3300023100|Ga0247738_10312876All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium501Open in IMG/M
3300025909|Ga0207705_10025796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum4193Open in IMG/M
3300025909|Ga0207705_10660673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium813Open in IMG/M
3300025909|Ga0207705_10801699All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300025913|Ga0207695_10008506All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium12832Open in IMG/M
3300025913|Ga0207695_10074419All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae3458Open in IMG/M
3300025913|Ga0207695_11167864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.650Open in IMG/M
3300025913|Ga0207695_11194943All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300025919|Ga0207657_10350532All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium1164Open in IMG/M
3300025919|Ga0207657_10994351All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.644Open in IMG/M
3300025920|Ga0207649_10171676All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1511Open in IMG/M
3300025924|Ga0207694_11358749All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae601Open in IMG/M
3300025931|Ga0207644_10192128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1606Open in IMG/M
3300025932|Ga0207690_10001133All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum16976Open in IMG/M
3300025938|Ga0207704_10001435All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10658Open in IMG/M
3300025938|Ga0207704_10004907All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6144Open in IMG/M
3300025941|Ga0207711_10000684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium33642Open in IMG/M
3300025961|Ga0207712_10467444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1073Open in IMG/M
3300026035|Ga0207703_11843864All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300026041|Ga0207639_12133343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.522Open in IMG/M
3300026078|Ga0207702_10500041All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1185Open in IMG/M
3300026088|Ga0207641_11443515All Organisms → cellular organisms → Bacteria → Proteobacteria689Open in IMG/M
3300026089|Ga0207648_12017969All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300026095|Ga0207676_10093909All Organisms → cellular organisms → Bacteria2471Open in IMG/M
3300026095|Ga0207676_12463450All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300026142|Ga0207698_10700284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium1008Open in IMG/M
3300026215|Ga0209849_1092423All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.534Open in IMG/M
3300027378|Ga0209981_1000385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum5640Open in IMG/M
3300028379|Ga0268266_10096102All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium2603Open in IMG/M
3300028379|Ga0268266_10364979All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium1359Open in IMG/M
3300028380|Ga0268265_10175913All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum1834Open in IMG/M
3300028485|Ga0233365_1097892All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300028786|Ga0307517_10306309All Organisms → cellular organisms → Bacteria → Proteobacteria887Open in IMG/M
3300030520|Ga0311372_10975735All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300031938|Ga0308175_101837072Not Available679Open in IMG/M
3300031938|Ga0308175_102105249All Organisms → cellular organisms → Bacteria → Proteobacteria633Open in IMG/M
3300031939|Ga0308174_11710944All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300031996|Ga0308176_10582789Not Available1147Open in IMG/M
3300034384|Ga0372946_0277554Not Available812Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere12.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere10.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere9.91%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere6.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.50%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.50%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere4.50%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.70%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.70%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.80%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.80%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.90%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.90%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.90%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.90%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.90%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.90%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.90%
Elk FecesHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces0.90%
FecalHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal0.90%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.90%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.90%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.90%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459012Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grassEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300005258Microbial communities on the surface of bentonite enhanced biocharEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010864Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010869Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012682Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)EnvironmentalOpen in IMG/M
3300012973Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 MetagenomeHost-AssociatedOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015202Arctic sediment microbial communities from supraglacial cryoconite, Storglaci?ren, Tarfala, Sweden (Sample st-12a, ablation zone cryoconite)EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300020034Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2EnvironmentalOpen in IMG/M
3300020060Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300023100Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L013-104B-2EnvironmentalOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026215Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)EnvironmentalOpen in IMG/M
3300027378Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028485Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C36Host-AssociatedOpen in IMG/M
3300028786Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EMHost-AssociatedOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N56_010604902170459012Grass SoilMPTYRAYRIDRRRHIQSAEWLEAPNDAAATAQAEELCEEGAPAIEVWQATRKVDEIDCEDDAGPEKTAT
INPhiseqgaiiFebDRAFT_10133361613300000364SoilMTTYRAYRVDQRNRILNGQWLDAPNDAEAKEQAEELCEEGAPTIELWQAARLVDEIDCGDAD*
Ga0074071_106622023300005258SoilRGLSMSTYRAYRVDHNRRIKSAEWLEAPNDAAAAEQAEEMCEEGAPKIELWQSTRLVEEIDCEED*
Ga0070658_1008742123300005327Corn RhizosphereMATYRAYRVDHNHRIKSAEWLEAPNDAAATEQAEELCEEGAPVIEIWQSKRLVDEVDCEEE*
Ga0070658_1036162513300005327Corn RhizosphereMTTYRAYRLDNRRHILNGTWLEAPDDEAAVDQAEELCEEGAPTIELWQAARKVDEIDCDPDEDES*
Ga0070658_1057151913300005327Corn RhizosphereLMATYRAYHVDRNRRFTGAKWLEAPTDEVAIAEAEELCEEGAPTIELWQAARLVEEIDCDEDD*
Ga0070658_1077377423300005327Corn RhizosphereMATYRAYRVDRRRHIQSAEWIEAPNDEAAAAKAEELCEEGAPTIELWQAARKVEEIDCEDDKPGG*
Ga0070658_1090540023300005327Corn RhizosphereMATYRAYRVDRHRHIQSAAWIEAPNDEAAADQAEELCEEGAPMIELWQSTRKVEEIDCEDDD*
Ga0070660_10021254023300005339Corn RhizosphereMTSYRAYRVDRHRRIKSAQWLEAPDDAAAAEQAEEMCEEGAPVIELWQSTRLVEEIDCEED*
Ga0070671_10053990613300005355Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGEWLEASDDAEAKDQAEELCGEGVPTIELWQAARLVDEIDCEDAD*
Ga0070673_10195906823300005364Switchgrass RhizosphereMATYRAYRIDRRNRIVNGQWLEASSDAEAKDQAEELCEEGAPSVELWQATRKVDEIDCEDQD*
Ga0070678_10196406523300005456Miscanthus RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDKAEELCEEGAPLIEVWQAARKVDEIDCEDDDAAPEAA*
Ga0070741_1129893523300005529Surface SoilMTTYRAYRVDRRHRIVNGQWLEAPDDAAAIDQAETLCEEGVPTIELWQASRLVDEIDCEPDNDEAG*
Ga0070684_10066206223300005535Corn RhizosphereMTTYRAYRVDKRRHILDGAWLEAPDDAAAVDQAEDLCEQGTPTIELWQAARLVDEIDCDPDADKD*
Ga0070684_10114964223300005535Corn RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEEDDAPPEAA*
Ga0070730_1015586833300005537Surface SoilLGVPPMTTYRAYRLDDRRRILNGQWIEAPDDAGAVDQAEELCDEAAPTIELWQATRLVDEIECGDDD*
Ga0070731_1025727933300005538Surface SoilMWGFEMTTYRAYRVDDRRRIKSAEWLDAPNDNAAVEQAEELCEEGAPTIEVWQSTRLVDEIACDEE*
Ga0068853_10196838323300005539Corn RhizosphereMTTYRAYRVDEQRRIKSAEWLEAPNDEAAAEQAQELCEDGAPTIELWQSKRLVD
Ga0070686_10130477423300005544Switchgrass RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEDDDAAPEAA*
Ga0070665_10057095523300005548Switchgrass RhizosphereMATYRAYRVDDQRRIKSAEWLEAPNDAAAAEQAEEMCEEGAPTIELWQSTRLVEEIDCEDG*
Ga0070665_10077442413300005548Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGQWLEASDDAEAKEQAEELCEEGAPTIELWQAARLVDEIDCEDAD*
Ga0070664_10124985223300005564Corn RhizosphereSTMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDKAEELCEEGAPLIEVWQAARKVDEIDCEDDEGTPEPA*
Ga0066691_1015299723300005586SoilMAIYRAYRVDRGRHIQSGEWLEAPDDKAAAEKAGELCEEGAPTIEIWQSTRLVDQIDCEGED*
Ga0068856_10051813223300005614Corn RhizosphereMTTYRAYRVDNRRRILNGTWLEAPSDAAAVDQAEQLCEEGAPAIEVWQAARLVDEIDCDDDDET*
Ga0068852_10106560813300005616Corn RhizosphereTYRAYRVDKRRHIRSAEWLDAPNDDAAKDQAEELCEEGAPTIELWQATRLVDEIDCEED*
Ga0068852_10139266113300005616Corn RhizosphereMATYRAYRVDSRRHIKSAQWLEAPNDAAAKDQAEELCEEGAPTIELWQAARLVDEIDCADED*
Ga0068859_10213707613300005617Switchgrass RhizosphereYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEDDDAAPEAA*
Ga0068864_10028691733300005618Switchgrass RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEDDEGTPEPA*
Ga0068864_10109671523300005618Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGQWLEATNDADAMEQAEELCEEGAPTIELWQAARLVDEIDCDES*
Ga0068864_10227124123300005618Switchgrass RhizosphereMPTYRAYRVDHRRHIQSAEWLTAPDDKAAAENAEDLCEEGAPVIELWQGPRLVEEIECEKDA*
Ga0068861_10157171523300005719Switchgrass RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPSDEHAVDKAEELCEEGAPLIEVWQAARKVDEIDCEDDDAAPEAA*
Ga0068863_10145574323300005841Switchgrass RhizosphereMPTYRAYRVDRRRHIQSAEWLEAPNDAAAAAQAEELCEEGAPTIEVWQATRKV
Ga0068862_10021363623300005844Switchgrass RhizosphereMTTYRAYRVDNKRRIRSAEWLDAPDDAAAKAKAEDLCDETSAGVELWQSKRLVEEIDCEGEPDKDA*
Ga0070717_1051227423300006028Corn, Switchgrass And Miscanthus RhizosphereMATYRAYHVDHSNRIRSAEWLEAPNDEAALEQAEDLCEQGLPTIEVWQAARLVDQIDCEDDD*
Ga0070716_10131204823300006173Corn, Switchgrass And Miscanthus RhizosphereMTSYRAYRVDRRRHIQSAEWIDAPNDAAAVDQAEDLCEEGAPAIELWQSTRLVEEIDCEED*
Ga0097621_10106498613300006237Miscanthus RhizosphereRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEIWQAARKVDEIDCEDDDAAPEAA*
Ga0097621_10188542123300006237Miscanthus RhizosphereMPTYRAYHLDKRHRILDGQWLDAPDDAAAVGQAEDLCEEGAPTIELWQAPRLVDEIDCED
Ga0068865_100000885103300006881Miscanthus RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDQAEELCEEGAPLIEIWQAARKVDEIDCEDDDAAPEAA*
Ga0105240_1000831623300009093Corn RhizosphereMVTYRAYRIDSRRHIRSAEWLDAPNDAAAKDQAEELCEEGAPTIELWQAARLVDEIDCADED*
Ga0105240_1001074673300009093Corn RhizosphereMATYRAYRVDRHRHIQSAAWIEAPNDQAAADQAEELCEEGAPTIELWQAARKVEEIDCEDDD*
Ga0105240_1176046513300009093Corn RhizosphereMTTYRAYRVDRSRHIQSAEWIDAPNDEAAVDKAEELCEEGAPLIELWQAARKVEEIDCEEEDDAPDTKSAA*
Ga0105245_1328995513300009098Miscanthus RhizosphereMATYRAYRVDRRRHIQSAEWIEAPNDDAAAEKAEELCEEGAPTIELWQAARKVEEIDCEEE*
Ga0105242_1202101123300009176Miscanthus RhizosphereMPTYRAYHLDKRHRILDGQWLDAPDDAAAVGQAEDLCEEGAPTIELWQAARLVDEIDCED
Ga0105248_10000279473300009177Switchgrass RhizosphereMTTYRAYRVDHSKHIRSAQWLDAPNDEAAVDQAEDLCEEGAPIIEVWQAARLVEEIDCEDDKDAPETP*
Ga0105238_1288475313300009551Corn RhizosphereMATYRAYRMDSRRRIRDAAWVEAPDDEQARAKASELCEEGAPLVELWQSTRLVDEIDCEPDKD*
Ga0105249_1036257923300009553Switchgrass RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDKAEELCEEGAPLIEVWQAARRVDEIDCEDDDAAPEAA*
Ga0105249_1243769023300009553Switchgrass RhizosphereMTTYRAYRIDRRNRIVNGQWLEASDDAEAKDQAEELCDEGAPTVELWQATRKVDEIDCEDEA*
Ga0134125_1105284223300010371Terrestrial SoilMSTYRAYRVDRSNRIKSAEWLDAPDDAAAAEQAQEMCEDGAPTIELWQSTRLVEEIDCEDEE*
Ga0134128_1040536133300010373Terrestrial SoilMATYRAYRVDNRRHIKSAEWLDAPSDAAAKDQAEELCEEGAPTIELWQAARLVDEIDCADED*
Ga0105239_1042431423300010375Corn RhizosphereMTTYRAYRVDHSKHIRSAQWLDAPNDDAAVDQAEDLCEEGAPIIEVWQAARLVEEIDCEDDKDAPEAP*
Ga0105239_1229112313300010375Corn RhizosphereMTTYRAYRVDKRRHIRSAEWLEAPNDEAAVGKAEELCEPGMPIVEVWQ
Ga0126357_112572423300010864Boreal Forest SoilMTTYRAYRLDERRHILNGQWLEAPNDAAAIDQAEDLCEEDVPTIELWQATRLVEEIDCADDADCPCEN*
Ga0126359_156851513300010869Boreal Forest SoilMTTYRAYRLDQRRHILDGTWLDAPNDAAAVDQAEELCEEGAPTIELWQ
Ga0150985_12224643323300012212Avena Fatua RhizosphereMATYRAYRIDRHRHIKSAEWIEAPTDEVAAAHAEELCEEGAPTVELWQAKRLVEEIDCEDDD*
Ga0136611_1080022123300012682Polar Desert SandMATYRAYRVDNKRHIQNGTWLEASNDGEAKAQASELCDQEAPVIELWQSTRLVGEIDCADDG*
Ga0123351_104574523300012973FecalMTTYRAYRVDSRRHIQSAAWLDAPNDAAARAKAAELCDEGTPAVELWQATRLVDEIECADEEA*
Ga0134087_1069310813300012977Grasslands SoilMPTYRAYRLDRRRHIKSAEWLDAPDDQAATNLAEELCEEEAPKIEVWQAARKVEEIDCEDND*
Ga0157374_1141519123300013296Miscanthus RhizosphereMAHYRAYRLDHHRHIKSAEWIEAPTDEAAAAKAEDLCEEGAPTIEVWQAARLVDQVDCEEDGQP*
Ga0157378_1188531623300013297Miscanthus RhizosphereMTTYRAYRVDRTHHIQSAEWIDAPSDEAAVDQAEELCEEGAPLIEVWQAARKVEEIDCEDGEDAPEGAPKAA*
Ga0163162_1175458723300013306Switchgrass RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPTIEVWQATRKVEEIDCEDDAPPKKTAA*
Ga0157375_1078593523300013308Miscanthus RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEIWQAARKVDEIDCEDDDAAPEAA*
Ga0157375_1153082623300013308Miscanthus RhizosphereMTTYRAYRVDQSNRIVDGQWLDAPNDAEAKEQAQELCEEGAPTIELWQAARLVDEIECEDAD*
Ga0163163_1004144623300014325Switchgrass RhizosphereMPTYRAYHVDRRRHIQSAQWIDAPTDEAAAAQAEELCEEGAPTIELWQATRKVEEIDCEDEEP*
Ga0157376_1162606123300014969Miscanthus RhizosphereMPTYRAYRVDRHRHIQSAEWLEAPNDDAATAKAEELCEEGAPKIEVWQATR
Ga0167663_113543523300015202Glacier Forefield SoilMATYRAYHVDRNHRFTGARWLDAPTDEVAIAEAAALCEEGAPTIELWQSTRLVEEIDCEADD*
Ga0066667_1132502423300018433Grasslands SoilMATYRAYHLDRRRRIQNGQWLEAPDDPAAVDQAEQLVGEGAPLIEVWQSARMVDEIECDE
Ga0066662_1216830323300018468Grasslands SoilMATYRAYRVNSRRHITGAEWLDAPNDSAAVEQAEDLCEEGAPTIEVWQAARLVDEIDCED
Ga0190273_1228932023300018920SoilMSTYRAYRLDRERHILKGEWLEADNDAEAVDKAEDLCEEGAPVIELWQAARLVEEIDCQDSE
Ga0193753_1003858733300020034SoilMATYRAYRIDRHRRIRSAEWLDAPSDEAAAEQAEALCEDGAPTIELWQSKRLVEQIDCEG
Ga0193717_113233823300020060SoilMTTYRAYRVDRRHRIINGQWLQAPSDAEAKDQAEELCEEGAPTVELWQATRLVDEIDCEDES
Ga0210400_100000811263300021170SoilMTTYRAYRLDDRRRILNGQWIEAPDDAGAVDQAEELCDEAAPTIELWQATRLVDEIECGDDD
Ga0210389_1027039323300021404SoilMPAYRAYQLNDRHRIVNGQWLEAPNDAAAVDQAEDLCEEGVPTIELWQSTRLVEEIECEDSDDCPCED
Ga0247738_1031287613300023100Plant LitterMTTYRAYRVDSRRHIQSAAWLDAPNDDVAREKAAELCDEGTPAVELWQATRLVDEIECAEEDA
Ga0207705_1002579623300025909Corn RhizosphereMTTYRAYRVDGNRRIKSAEWLDAPNDAAAAEQAEEMCEDGAPKIELWQSTRLVDEIDCED
Ga0207705_1066067323300025909Corn RhizosphereMATYRAYRVDRHRHIQSAAWIEAPNDEAAADQAEELCEEGAPMIELWQSTRKVEEIDCEDDD
Ga0207705_1080169913300025909Corn RhizosphereLMATYRAYHVDRNRRFTGAKWLEAPTDEVAIAEAEELCEEGAPTIELWQAARLVEEIDCDEDD
Ga0207695_1000850673300025913Corn RhizosphereMATYRAYRVDRHRHIQSAAWIEAPNDQAAADQAEELCEEGAPTIELWQAARKVEEIDCEDDD
Ga0207695_1007441923300025913Corn RhizosphereMVTYRAYRIDSRRHIRSAEWLDAPNDAAAKDQAEELCEEGAPTIELWQAARLVDEIDCADED
Ga0207695_1116786413300025913Corn RhizosphereMTTYRAYRVDNRRRILNGTWLEAPSDAAAVDQAEQLCEEGAPAIEVWQAARLVDEIDCGDDDET
Ga0207695_1119494323300025913Corn RhizosphereARFPERQFGGSGMATYRAYRVDHNHRIKSAEWLEAPNDAAATEQAEELCEEGAPVIEIWQSKRLVDEVDCEEE
Ga0207657_1035053223300025919Corn RhizosphereMATYRAYRVDHNHRIKSAEWLEAPNDAAATEQAEELCEEGAPVIEIWQSKRLVDEVDCEE
Ga0207657_1099435123300025919Corn RhizosphereMPTYRAYHLDKRHRILDGQWLDAPDDAAAVGQAEDLCEEGAPTIEIWQAARLVDEIDCED
Ga0207649_1017167633300025920Corn RhizosphereMTTYRAYRVDKRRHILDGAWLEAPDDAAAVDQAEDLCEQGTPTIELWQAARLVDEIDCDPDADKD
Ga0207694_1135874923300025924Corn RhizosphereMTTYRAYRVDRHRHIQSAEWLDAPNDAGAKAQAEELCEEGAPTVELWQATRLVEEIECDP
Ga0207644_1019212823300025931Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGEWLEASDDAEAKDQAEELCDEGVPTIELWQAARLVDEIDCEDAD
Ga0207690_1000113323300025932Corn RhizosphereMTSYRAYRVDRHRRIKSAQWLEAPDDAAAAEQAEEMCEEGAPVIELWQSTRLVEEIDCEE
Ga0207704_1000143513300025938Miscanthus RhizosphereHHIQSAEWIEAPSDEHAVDQAEELCEEGAPLIEIWQAARKVDEIDCEDDDAAPEAA
Ga0207704_1000490743300025938Miscanthus RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDKAEELCEEGAPIIE
Ga0207711_10000684173300025941Switchgrass RhizosphereMTTYRAYRVDHSKHIRSAQWLDAPNDEAAVDQAEDLCEEGAPIIEVWQAARLVEEIDCEDDKDAPETP
Ga0207712_1046744423300025961Switchgrass RhizosphereMTTYRAYRVDRTHHIQSAEWIEAPSDEHAVDKAEELCEEGAPLIEVWQAARRVDEIDCEDDDAAPEAA
Ga0207703_1184386413300026035Switchgrass RhizosphereAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEIWQAARKVDEIDCEDDDAAPEAA
Ga0207639_1213334323300026041Corn RhizosphereMNTYRAYRVDHNRRIKSAEWLEAPNDAAAAEQAEEMCEEGAPKIELWQSTRLVEEIDCEDDA
Ga0207702_1050004123300026078Corn RhizosphereMTTYRAYRVDNRRRILNGTWLEAPSDAAAVDQAEQLCEEGAPAIEVWQAARLVDEIDCDDDDET
Ga0207641_1144351523300026088Switchgrass RhizosphereMATYRAYRIDRRNRIVNGQWLEASSDAEAKDQAEELCEEGAPSVELWQATRKVDEIDCEDQD
Ga0207648_1201796923300026089Miscanthus RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEDDDAAPEAA
Ga0207676_1009390933300026095Switchgrass RhizosphereMPTYRAYRVDRRHHIQSAEWIEAPTDEHAVDQAEELCEEGAPLIEVWQAARKVDEIDCEDDEGTPEPA
Ga0207676_1246345023300026095Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGQWLEATNDADAMEQAEELCEEGAPTIELWQAARLVDEIDCDE
Ga0207698_1070028423300026142Corn RhizosphereMATYRAYRVDKRRHIRSAEWLDAPNDDAAKDQAEELCEEGAPTIELWQATRLVDEIDCEE
Ga0209849_109242323300026215SoilMATYRAYRVDSRRHIQSAEWIEAPSDAAAAAQAEELCEEGAPTIELWQATRKVEEIDCEG
Ga0209981_100038553300027378Arabidopsis Thaliana RhizosphereMGTYRAYRIDERNRIKNAEWLDAPDDESAKEQAAELCEEGAPVIELWQSTRLVDEIECED
Ga0268266_1009610233300028379Switchgrass RhizosphereMTTYRAYRVDRRNHIVNGQWLEASDDAEAKEQAEELCEEGAPTIELWQAARLVDEIDCEDAD
Ga0268266_1036497923300028379Switchgrass RhizosphereMATYRAYRVDDQRRIKSAEWLEAPNDAAAAEQAEEMCEEGAPTIELWQSTRLVEEIDCED
Ga0268265_1017591323300028380Switchgrass RhizosphereMTTYRAYRVDNKRRIRSAEWLDAPDDAAAKAKAEDLCDETSAGVELWQSKRLVEEIDCEGEPDKDA
Ga0233365_109789223300028485Elk FecesRKVGGSSMTTYRAYRVDSRRHIQSAAWLDAPNDAAARAKAAELCDEGTPAVELWQATRLVDEIECADEEA
Ga0307517_1030630923300028786EctomycorrhizaMTAYRAYRVDRRNHIVNGQWIEASNDAEAVDQAEDLCEEGVPTIELWQATRLVEEIDCED
Ga0311372_1097573523300030520PalsaMTTYRAYRLDSRRHILNGQWLEAPNDAAAVDQAGELCEEGAPTIEVWQATRLVDEVDCEDEAS
Ga0308175_10183707213300031938SoilMTTYRAYRVDRNRRIKSAEWLDAPNDAAAAEQAEEMCEDGAPKIELWESTRLVDEIDCEE
Ga0308175_10210524923300031938SoilTYRAYRVDKRRHIINGEWLDAPNDAAAKDQAEELCEEGAPTIELWQATRLVDEIDCENQS
Ga0308174_1171094413300031939SoilMPTYRAYRVDRARHIQSAEWLEAPNDEAAAEQAEELCEEGAPTIEVWQAARKVDEIDCEEDDKPEGPSSGSPDPRS
Ga0308176_1058278913300031996SoilMTTYRAYRVDRNRRIKSAEWLDAPNDAAAAEQAEEMCEDGAPKIELWE
Ga0372946_0277554_457_6453300034384SoilMTTYRAYRVDRRRHILNGQWLEARNDAEAKDQAEELCEEGAPTIELWQAARLVDEIDCADED

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.