3300028485: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C36

Overview

Basic Information

• IMG/M Taxon OID: 3300028485
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272168 | Ga0233365
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C36
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 260506115
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F051619	Metagenome / Metatranscriptome	143	Y
F060691	Metagenome / Metatranscriptome	132	Y
F086058	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233365_1000110	Not Available	43119
Ga0233365_1094475	Not Available	623
Ga0233365_1096198	Not Available	616
Ga0233365_1097892	All Organisms → cellular organisms → Bacteria	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233365_1000110	Ga0233365_100011051	F003605	VAVGDQAQAAGFPLVPDTGEEGRVRWGGREINRTRDLIAAVKALLPIGKPGYRTASGISTGTADPTGGVDGDIYFKILD
Ga0233365_1094475	Ga0233365_10944751	F060691	MLMAVEGMDPTLKMIFFAAAVVLFALAAIGYSRGKVSFLAAGLAAFAIPFFWDALAAS
Ga0233365_1096198	Ga0233365_10961982	F051619	MNNDINWTQVRIDASINIMNAILSSSIMVFIFQFIFKKQIADIAVEYADKLVE
Ga0233365_1097892	Ga0233365_10978922	F086058	RKVGGSSMTTYRAYRVDSRRHIQSAAWLDAPNDAAARAKAAELCDEGTPAVELWQATRLVDEIECADEEA