3300000166: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 200m

Overview

Basic Information

• IMG/M Taxon OID: 3300000166
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053420 | Ga0026177
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 200m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46618981
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027418	Metagenome	194	Y
F043443	Metagenome / Metatranscriptome	156	Y
F048788	Metagenome	147	Y
F052275	Metagenome / Metatranscriptome	143	Y
F078399	Metagenome / Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SI48aug10_200mDRAFT_c1000984	Not Available	4117
SI48aug10_200mDRAFT_c1005491	Not Available	1229
SI48aug10_200mDRAFT_c1006869	Not Available	1049
SI48aug10_200mDRAFT_c1017869	Not Available	568
SI48aug10_200mDRAFT_c1021771	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI48aug10_200mDRAFT_c1000892	SI48aug10_200mDRAFT_10008924	F027418	GWKFNQEIFIPLNIKSLNMCCCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHIEDYNKELNNLPNSIEYLKLINYYLKIKKIPKNLKTVKCDKKYKYIDDFKDYKVIF*
SI48aug10_200mDRAFT_c1000984	SI48aug10_200mDRAFT_10009844	F048788	MENNYWIVNDWLIFKPEFNEPSDDYYDIINQYKKIMFSNYNDPLIAIETNNKYDDKYDNKYNNNLTHLTFGEYFNQKIDLSNNINLTHLIFG*
SI48aug10_200mDRAFT_c1004353	SI48aug10_200mDRAFT_10043532	F027418	MCWCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHINYYKKELNNLPNSIEYLELKNNKLKIKKIPKNFKTIKCGKNYEYIDDFKDYEVITY*
SI48aug10_200mDRAFT_c1005491	SI48aug10_200mDRAFT_10054912	F048788	MENNYWIVDGWLIFKPEFNEELTNYYGIINKYKKIMFSNYKDPSIAIKTNNKYSNNLIQSKFNQEIDLSNNVNLTHL
SI48aug10_200mDRAFT_c1006869	SI48aug10_200mDRAFT_10068692	F078399	MENNSWYWIEDGWLIFKPSFNNNLLNYYDVINKYKKIIFSNYNKHL
SI48aug10_200mDRAFT_c1012430	SI48aug10_200mDRAFT_10124301	F027418	FNQEIFIPLNVKSLTMDYCNNQYIIDNLHNNIEEINIYRTDLNLDNLPNSIKKLYIMQYEKELNNLPNSIEYLELINYNLKIKKIPKNLKIVKCDKDYKYINDFKNYEVITY*
SI48aug10_200mDRAFT_c1017869	SI48aug10_200mDRAFT_10178691	F052275	LSTTSKYKCHSCGYTAEVWDEPDKAPIATVDTRHCLGCKSLVEVPIEFHGGGLIEDPDVVPSFLNRCPDCNSSNVQSWDTKHSCPRCGEHMTSE
SI48aug10_200mDRAFT_c1021771	SI48aug10_200mDRAFT_10217712	F043443	VNDKLLELKRKKLQHQILYLKTELEETTFIFNDSLVEFEKEFGEYFRKKKTSKDAKRVATDPIEYDIPEKDVNIVFKKIAQKTHPDKLENKNISQVRHNKLVDLYKEALGSVKNKDWSRV