3300026645: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN342 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026645
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054645 | Ga0208572
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN342 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3077562
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001520	Metagenome / Metatranscriptome	679	Y
F018032	Metagenome / Metatranscriptome	237	Y
F028105	Metagenome	192	Y
F033550	Metagenome / Metatranscriptome	177	Y
F077695	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208572_10042	All Organisms → cellular organisms → Bacteria	1207
Ga0208572_10166	All Organisms → cellular organisms → Bacteria	703
Ga0208572_10338	Not Available	549
Ga0208572_10389	Not Available	524
Ga0208572_10429	All Organisms → cellular organisms → Bacteria	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208572_10042	Ga0208572_100422	F028105	WGGGFNGSTQHLLILLEKEVCDGGDCTNMVHAAAEG
Ga0208572_10166	Ga0208572_101662	F033550	MNSTLVSRNILLCVAAIFIASCGTATFSKSGSDATIESLRSFHLAFIDEFAVPGKKFNAAAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLK
Ga0208572_10338	Ga0208572_103381	F077695	MAYSIGPGVQQAIADNGDEARSDERFIILDEGHKVSLTFGRDATYYWYEEDNR
Ga0208572_10389	Ga0208572_103891	F001520	MNAVKFLFAAYIATWAIHLLYISTIARRFSKLRQQLKELSKGK
Ga0208572_10429	Ga0208572_104291	F018032	GWRSYLLKKAELAVDAGVDAIMWDNMIGYNEGLAQLLDDTQRMAERKARQTGRPKVMVEANIHIAPDRFAMNEMNEVIWEEDGKDTPGVSNGRWQVGNARKIKFLSGEKQPWQPLKYENDLYHCGPRERCIPSPAEQKLSIAEAYAFGAATSRNIEGRFLSALIKGEPEA