3300026346: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C5

Overview

Basic Information

• IMG/M Taxon OID: 3300026346
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133548 | Gp0296345 | Ga0256812
• Sample Name: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C5
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47202939
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 31.3377
  • Long. (^o): -81.4644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007982	Metagenome / Metatranscriptome	341	Y
F014394	Metagenome / Metatranscriptome	263	Y
F053838	Metagenome / Metatranscriptome	140	Y
F060457	Metagenome / Metatranscriptome	133	Y
F062283	Metagenome	131	N
F077451	Metagenome / Metatranscriptome	117	Y
F094061	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256812_1000511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1209
Ga0256812_1001594	All Organisms → cellular organisms → Bacteria	890
Ga0256812_1003228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	731
Ga0256812_1006144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	604
Ga0256812_1006541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	594
Ga0256812_1007459	Not Available	570

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256812_1000511	Ga0256812_10005113	F014394	MRGGSRVIATFVAAVVWIYAGMSVASRPVAQQAITPSVLDVAATCAIAVVD
Ga0256812_1001594	Ga0256812_10015941	F007982	MRPAARLTLSCLVLSLLAACGAPSPPQDEAEAREKGRDTDKTVFDDMIQTEDRARAVEGVVLGQKADL
Ga0256812_1002808	Ga0256812_10028082	F077451	PPPSTLSSIAGGLGGLFGKNSPGRWAGLAASFTELGMDLDTAKKFRPIVIDYVAHHGGENLVEKMRVALRL
Ga0256812_1003228	Ga0256812_10032281	F062283	VVQISPPLQRSFLSLLPLLFWICKTFYADGDGGVEADNILKGLLECTGNKGGGMKQSVIFLMILTFVGPLSVFAATLQNTDSQEYELQIKEEGRPYGSYYGPYGDEFRVLEHCKTDICHYGCEMTLVSTGQKVWVNPRDEVVISYRVMKVNRAANDRRGGY
Ga0256812_1006144	Ga0256812_10061441	F060457	DNAEPHNSSSDLGIFLSTIFHIASIACVPFLVNGTVNGNMYACGLLIVWTIYYSMRLAKSRKLLGLAFFVMILSAVVFGIYNFGLMSHYKNAKIYLEEEEIFCRETTYETLLSKYETEKSMISANFRICLDKAHVQPETCIKEVNHGTSLNEVMLSNRLLRLSNCANSLTTKQKSVDRLKHRPWVKFWLGFL
Ga0256812_1006541	Ga0256812_10065411	F094061	QLMGEGENDVEVRGREEFGVAFFKPSLSGDVLTLGAVSIAAGVIEDTLCAAVGAALDVATQGGGAAVKEVGDDPVLIWG
Ga0256812_1007459	Ga0256812_10074591	F053838	CGPLIAAHLGASAKPAGRALFFLGVKRNFTTAPAGDMGELVHLSH