NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F070666

Metagenome / Metatranscriptome Family F070666

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070666
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 57 residues
Representative Sequence VVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST
Number of Associated Samples 66
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.81 %
% of genes near scaffold ends (potentially truncated) 77.24 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.187 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(36.585 % of family members)
Environment Ontology (ENVO) Unclassified
(55.285 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(48.780 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.49%    β-sheet: 19.77%    Coil/Unstructured: 76.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.19 %
All OrganismsrootAll Organisms0.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001438|JGI24035J14997_100120Not Available654Open in IMG/M
3300002239|JGI24034J26672_10103704Not Available538Open in IMG/M
3300002541|JGI25329J36429_1042925Not Available511Open in IMG/M
3300005289|Ga0065704_10036080Not Available685Open in IMG/M
3300005330|Ga0070690_100866350Not Available704Open in IMG/M
3300005330|Ga0070690_100930030Not Available681Open in IMG/M
3300005330|Ga0070690_100930030Not Available681Open in IMG/M
3300005330|Ga0070690_101760505Not Available504Open in IMG/M
3300005331|Ga0070670_101689323Not Available582Open in IMG/M
3300005335|Ga0070666_10822934Not Available684Open in IMG/M
3300005335|Ga0070666_11324046Not Available537Open in IMG/M
3300005335|Ga0070666_11328745Not Available536Open in IMG/M
3300005335|Ga0070666_11404877Not Available521Open in IMG/M
3300005335|Ga0070666_11404877Not Available521Open in IMG/M
3300005347|Ga0070668_102253134Not Available503Open in IMG/M
3300005355|Ga0070671_101410211Not Available615Open in IMG/M
3300005355|Ga0070671_101546291Not Available587Open in IMG/M
3300005355|Ga0070671_101556555Not Available585Open in IMG/M
3300005355|Ga0070671_101661989Not Available566Open in IMG/M
3300005355|Ga0070671_101957212Not Available521Open in IMG/M
3300005355|Ga0070671_102002247Not Available515Open in IMG/M
3300005406|Ga0070703_10162451Not Available848Open in IMG/M
3300005406|Ga0070703_10162451Not Available848Open in IMG/M
3300005438|Ga0070701_10858507Not Available623Open in IMG/M
3300005440|Ga0070705_101908565Not Available505Open in IMG/M
3300005440|Ga0070705_101908565Not Available505Open in IMG/M
3300005441|Ga0070700_101837710Not Available522Open in IMG/M
3300005466|Ga0070685_10936768Not Available646Open in IMG/M
3300005467|Ga0070706_101243711Not Available683Open in IMG/M
3300005467|Ga0070706_101502888Not Available615Open in IMG/M
3300005544|Ga0070686_100914559Not Available714Open in IMG/M
3300005544|Ga0070686_101331978Not Available600Open in IMG/M
3300005544|Ga0070686_101628843Not Available546Open in IMG/M
3300005544|Ga0070686_101904421Not Available507Open in IMG/M
3300005548|Ga0070665_102079829Not Available572Open in IMG/M
3300005548|Ga0070665_102120521Not Available566Open in IMG/M
3300005618|Ga0068864_102299008Not Available545Open in IMG/M
3300005719|Ga0068861_101549777Not Available651Open in IMG/M
3300005841|Ga0068863_100661512Not Available1036Open in IMG/M
3300005841|Ga0068863_100661512Not Available1036Open in IMG/M
3300005841|Ga0068863_101500861Not Available682Open in IMG/M
3300005841|Ga0068863_102465532Not Available529Open in IMG/M
3300005841|Ga0068863_102616834Not Available513Open in IMG/M
3300005841|Ga0068863_102697565Not Available505Open in IMG/M
3300005842|Ga0068858_101069769Not Available791Open in IMG/M
3300005842|Ga0068858_101496968Not Available665Open in IMG/M
3300005842|Ga0068858_101672253Not Available628Open in IMG/M
3300005842|Ga0068858_101867831Not Available593Open in IMG/M
3300005842|Ga0068858_101904732Not Available587Open in IMG/M
3300005842|Ga0068858_102190271Not Available546Open in IMG/M
3300005842|Ga0068858_102450528Not Available515Open in IMG/M
3300005843|Ga0068860_101549441Not Available684Open in IMG/M
3300005843|Ga0068860_102009753Not Available599Open in IMG/M
3300005843|Ga0068860_102505203Not Available535Open in IMG/M
3300005843|Ga0068860_102523136Not Available533Open in IMG/M
3300005843|Ga0068860_102666318Not Available518Open in IMG/M
3300005843|Ga0068860_102727004Not Available512Open in IMG/M
3300005844|Ga0068862_101854386Not Available612Open in IMG/M
3300009977|Ga0105141_124172Not Available537Open in IMG/M
3300010265|Ga0134098_1067188Not Available555Open in IMG/M
3300014326|Ga0157380_12876616Not Available548Open in IMG/M
3300015270|Ga0182183_1094273Not Available504Open in IMG/M
3300015280|Ga0182100_1089064Not Available524Open in IMG/M
3300015301|Ga0182184_1074308Not Available560Open in IMG/M
3300015310|Ga0182162_1064008Not Available653Open in IMG/M
3300015317|Ga0182136_1076550Not Available636Open in IMG/M
3300015317|Ga0182136_1106557Not Available562Open in IMG/M
3300015319|Ga0182130_1101524Not Available564Open in IMG/M
3300015319|Ga0182130_1112335Not Available543Open in IMG/M
3300015324|Ga0182134_1067033Not Available682Open in IMG/M
3300015325|Ga0182148_1122369Not Available539Open in IMG/M
3300015327|Ga0182114_1125274Not Available561Open in IMG/M
3300015329|Ga0182135_1154015Not Available503Open in IMG/M
3300015330|Ga0182152_1083416Not Available643Open in IMG/M
3300015330|Ga0182152_1117184Not Available563Open in IMG/M
3300015333|Ga0182147_1134496Not Available554Open in IMG/M
3300015333|Ga0182147_1167197Not Available505Open in IMG/M
3300015336|Ga0182150_1142944Not Available535Open in IMG/M
3300015337|Ga0182151_1110310Not Available595Open in IMG/M
3300015338|Ga0182137_1088563Not Available679Open in IMG/M
3300015339|Ga0182149_1060886Not Available765Open in IMG/M
3300015348|Ga0182115_1289111Not Available518Open in IMG/M
3300015349|Ga0182185_1179569Not Available637Open in IMG/M
3300015349|Ga0182185_1179658Not Available637Open in IMG/M
3300015352|Ga0182169_1134557Not Available803Open in IMG/M
3300015352|Ga0182169_1296091Not Available522Open in IMG/M
3300015352|Ga0182169_1297669Not Available520Open in IMG/M
3300015353|Ga0182179_1252891Not Available568Open in IMG/M
3300015353|Ga0182179_1254381Not Available567Open in IMG/M
3300015353|Ga0182179_1306276Not Available517Open in IMG/M
3300015353|Ga0182179_1315667Not Available509Open in IMG/M
3300017408|Ga0182197_1128988Not Available535Open in IMG/M
3300017408|Ga0182197_1148409Not Available507Open in IMG/M
3300017412|Ga0182199_1132488Not Available598Open in IMG/M
3300017412|Ga0182199_1139198Not Available586Open in IMG/M
3300017432|Ga0182196_1158285Not Available500Open in IMG/M
3300017435|Ga0182194_1087493Not Available623Open in IMG/M
3300017691|Ga0182212_1077656Not Available738Open in IMG/M
3300017693|Ga0182216_1085359Not Available736Open in IMG/M
3300017693|Ga0182216_1139902Not Available608Open in IMG/M
3300017693|Ga0182216_1169632Not Available563Open in IMG/M
3300020023|Ga0182178_1001923Not Available1138Open in IMG/M
3300020023|Ga0182178_1002493All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1048Open in IMG/M
3300028050|Ga0268328_1016511Not Available830Open in IMG/M
3300028050|Ga0268328_1050784Not Available572Open in IMG/M
3300028056|Ga0268330_1041620Not Available584Open in IMG/M
3300028056|Ga0268330_1047322Not Available557Open in IMG/M
3300028056|Ga0268330_1057586Not Available518Open in IMG/M
3300028058|Ga0268332_1036566Not Available666Open in IMG/M
3300028058|Ga0268332_1051775Not Available590Open in IMG/M
3300028062|Ga0268342_1040131Not Available523Open in IMG/M
3300028064|Ga0268340_1031935Not Available718Open in IMG/M
3300028471|Ga0268323_1007663Not Available685Open in IMG/M
3300028472|Ga0268315_1005336Not Available821Open in IMG/M
3300028472|Ga0268315_1022726Not Available536Open in IMG/M
3300028474|Ga0268331_1025155Not Available523Open in IMG/M
3300028475|Ga0268327_1001973Not Available1046Open in IMG/M
3300028475|Ga0268327_1019360Not Available560Open in IMG/M
3300028475|Ga0268327_1025785Not Available513Open in IMG/M
3300028529|Ga0268311_1027126Not Available518Open in IMG/M
3300032465|Ga0214493_1168151Not Available502Open in IMG/M
3300032699|Ga0214494_1095526Not Available557Open in IMG/M
3300032844|Ga0314743_1101181Not Available661Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere36.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere17.89%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere13.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere12.20%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere7.32%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.50%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated0.81%
Ionic Liquid And High Solid EnrichedEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched0.81%
Switchgrass DegradingEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001438Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5Host-AssociatedOpen in IMG/M
3300002239Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2Host-AssociatedOpen in IMG/M
3300002541Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-DEngineeredOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300009977Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaGHost-AssociatedOpen in IMG/M
3300010265Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 9_31_10_142_A3 metaGEngineeredOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017691Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028062Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028064Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028471Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028475Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032465Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032699Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032844Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24035J14997_10012013300001438Corn, Switchgrass And Miscanthus RhizosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAAIHLTVEAST
JGI24034J26672_1010370413300002239Corn, Switchgrass And Miscanthus RhizosphereSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST*
JGI25329J36429_104292513300002541Ionic Liquid And High Solid EnrichedVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQYPAKQST*
Ga0065704_1003608013300005289Switchgrass RhizospherePPDIINFDPQAIFSVELLPGGGQAHHKMHCILTPAFIGSRCRIRGARQHPAKQST*
Ga0070690_10086635013300005330Switchgrass RhizospherePQAIFSVELLPGGGQAHHKMDLILTPAFIGSRYRIRGARQHPAKQST*
Ga0070690_10093003013300005330Switchgrass RhizosphereVVFPRISSIFDPQAIFSVELLSGGGQAHHKMDCILTPAFIGSRCRIRGAHQHPAKQS
Ga0070690_10093003023300005330Switchgrass RhizosphereDIINIDPQAIFSVELLPGGGQAHHKMDCILTPAYIGSRCRIRGARKHLVKQST*
Ga0070690_10176050513300005330Switchgrass RhizosphereVVFPRISSIFDPQTIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHLAKQST*
Ga0070670_10168932313300005331Switchgrass RhizosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQS
Ga0070666_1082293413300005335Switchgrass RhizosphereLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPVFIGSRCRIRGARQHPAKQST*
Ga0070666_1132404613300005335Switchgrass RhizosphereVVFPQISSIFDPQAIFSVELLPGGGQANHKMGCILTPAFIGSRCGIRGARQHPAKQST*
Ga0070666_1132874513300005335Switchgrass RhizosphereIFSVELLPGGGQAHHKMDCTLTPAFIGSRRRIRGARQHLAKQSI*
Ga0070666_1140487713300005335Switchgrass RhizosphereVVFPRISSIFDPQAIFSVELFPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST
Ga0070666_1140487723300005335Switchgrass RhizosphereSIFDPQDIFSVELLPGGGQAHHKMDCILTPAFVGSRCRIRGARQHPAKQST*
Ga0070668_10225313413300005347Switchgrass RhizosphereMVFPRISSIFDLQAIFSVELLPGGSEAHHKMDSILTPAFISSRCRIRGARQYPAKQST*
Ga0070671_10141021123300005355Switchgrass RhizosphereDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGAHQHPAKQST*
Ga0070671_10154629113300005355Switchgrass RhizospherePQAIFSVELLPGGGQAHHKMDCILTPAFIGSTCRIRGARQHLAKQST*
Ga0070671_10155655523300005355Switchgrass RhizosphereVVFPRISSIFDPQTIFSVKLLPGGGQAHHKMDCILTPAFIGSRCRIRGSRQHPAKQST
Ga0070671_10166198913300005355Switchgrass RhizosphereFSVELLPGGGQAHHKMDCTLTPAFIGSR*RIEGSRQHPTKQSI*
Ga0070671_10195721213300005355Switchgrass RhizosphereLNFQKYKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRSRIRGARQHPAKQST*
Ga0070671_10200224713300005355Switchgrass RhizosphereVVFPRISLIFNPQAIFIVELLPGGGQAHHKMDCILTPTFIGSTCRIRGVHQHPAKQST*
Ga0070703_1016245113300005406Corn, Switchgrass And Miscanthus RhizosphereVVFPRISSIFDLQTIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAK
Ga0070703_1016245123300005406Corn, Switchgrass And Miscanthus RhizosphereMVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQYPAKQST*
Ga0070701_1085850713300005438Corn, Switchgrass And Miscanthus RhizosphereFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGAHQHPAKQSI*
Ga0070705_10190856513300005440Corn, Switchgrass And Miscanthus RhizosphereISSIFDPQAIFIVELLPGGGQAHHKMDCILTPAFIGSRCGIRGARQHPAKQST*
Ga0070705_10190856523300005440Corn, Switchgrass And Miscanthus RhizosphereVVFPRISSIFDPQAIFSVELLPGVGQAHHKMDCILTPAFIGSRCRIRGARQ
Ga0070700_10183771013300005441Corn, Switchgrass And Miscanthus RhizosphereKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMHCILTPAFIGSRCRIRGARQHPAKQST*
Ga0070685_1093676813300005466Switchgrass RhizosphereVVFLRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST*
Ga0070706_10124371113300005467Corn, Switchgrass And Miscanthus RhizosphereLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMHCILTPAFIGSRCRIRGARQHPAKQST*
Ga0070706_10150288813300005467Corn, Switchgrass And Miscanthus RhizosphereFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGGRQHPAKQST*
Ga0070686_10091455913300005544Switchgrass RhizosphereLNFQKYKQLATNVVFPRISSIFDPQAIFSVELLPSGGQAHRKMDCILTPAFIGSRCRIRGARQHPTKQST*
Ga0070686_10133197813300005544Switchgrass RhizosphereNFLKNKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRVRGARQHPAKQSN*
Ga0070686_10162884323300005544Switchgrass RhizosphereVVFPRISKIFDPQAIFSAELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQS
Ga0070686_10190442123300005544Switchgrass RhizosphereVVFPRISSIFEPQAIFSVELLPGGGQAHRKMDCILTPAFIGSRCRIRGARQHPAKQST*
Ga0070665_10207982913300005548Switchgrass RhizosphereMVFPRISLIFNPQAIFIVELLPGGGQAHHKMDCILTPTFIGSTCRIRGVHQHPAKQST*
Ga0070665_10212052113300005548Switchgrass RhizosphereKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPVFIGSRCRIRGARQHPAKQST*
Ga0068864_10229900813300005618Switchgrass RhizosphereMWIPPDIINFDPQAIFSVELLPGGGQGHHKMDCILTPTFIGSRFGIRGTCQHQAKQST*
Ga0068861_10154977713300005719Switchgrass RhizosphereVVFPRISLIFNPQAIFIVELLPGGGQAHHKMDCILTPTFIGSTCRIRGARQHPAKQST*
Ga0068863_10066151213300005841Switchgrass RhizosphereVVFPWISSIFDPQDIFSVELLPGGGQAHHKMDCILIPAFIGSICRIRGAHQHPAKQST*
Ga0068863_10066151223300005841Switchgrass RhizosphereVVFPRISSIFDPQAIFSVEVLPSGGQAHHKMDCILTPAFIGSVCRIRGARQHPAKQST*
Ga0068863_10150086123300005841Switchgrass RhizosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST*
Ga0068863_10246553213300005841Switchgrass RhizosphereMVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPTFIGSRCRIRGARQHLAKRST*
Ga0068863_10261683423300005841Switchgrass RhizosphereVVFPRISSIFYPQAIFNVKLLPGGGQAHHKMDCILTPAFIGSRCRIKGARQHPAKQST*
Ga0068863_10269756513300005841Switchgrass RhizosphereVVFPRISSIFDPQAIFCVELLPGGGQAHRKMDCILTPTFIGSRCRIRGARQYLAKQST*
Ga0068858_10106976913300005842Switchgrass RhizosphereMVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCISTTAFIGSRCRIRGARQHPAKQYLTVEAAHEKWDSSAK
Ga0068858_10149696813300005842Switchgrass RhizosphereSSIFDPQAIFSIELLPGGGQAHHKMDCILTPAFIGSSCRIRGARQHSAKQST*
Ga0068858_10167225323300005842Switchgrass RhizosphereMSSIFDPQAIFSVELLPGGGQAHHKMHCILNPAFIGSRCRIRGARQHPAKQST*
Ga0068858_10186783123300005842Switchgrass RhizosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCIISGARQHPAKQST*
Ga0068858_10190473213300005842Switchgrass RhizosphereVVFPRISSIFNLQAIFNVELLPGGGQAHHKMHCILTPAFIGSRCRIRGAHQHPA
Ga0068858_10219027123300005842Switchgrass RhizosphereGIPPDIINIDPQAIFSVELLPGGGQAHHKMHCILTPAFISSRCRIRGARQHPAKQSN*
Ga0068858_10245052823300005842Switchgrass RhizosphereFQKYKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHEMDCILTPAFIDSRCRIRGARQYPAKQST*
Ga0068860_10154944113300005843Switchgrass RhizosphereMKRLYLNFLKNKQLATNVVFPRISSIFDPQAIFSAELHPGGGQAHHKMDCILTPAFIGSRCRIRGGCQHPAKQSA*
Ga0068860_10200975313300005843Switchgrass RhizospherePDIINIDPQAIFSVELLPSGGQAHHKIDCILTHAFIGSRCRIRDARQHPAKQST*
Ga0068860_10250520323300005843Switchgrass RhizosphereVVFPWISSIFDPQDIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHP
Ga0068860_10252313623300005843Switchgrass RhizosphereVVFPRISSIFDPQASFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHP
Ga0068860_10266631813300005843Switchgrass RhizosphereKYKQLETNVVFPRISSIFDPQAIFSVELLPGRGQAHHKRDCILTPAFIGSRCKITGARQHPAKQST*
Ga0068860_10272700413300005843Switchgrass RhizosphereVVFPQISSIFDPQAIFSVELLPDGGKAHHKMDCILTPAFIDSRCRIRGARQHPVKQST*
Ga0068862_10185438613300005844Switchgrass RhizosphereVVFPRISSIFDPQSIFSVELLPGGGQAHHKMDSILTPAFIGSRCRIRGARQYPAKQST*
Ga0105141_12417213300009977Switchgrass AssociatedSSIFDPQAIFGVELLPGAGQAHHEMDCVLTPAFIGSRFRIIGARQHPAKQSI*
Ga0134098_106718813300010265Switchgrass DegradingPQAIFSVELLPGGGQAHHKMDCILTPTFIGSRCRIRGARQHPAKQST*
Ga0157380_1287661613300014326Switchgrass RhizosphereMVFPRISSIFDPQTIFSVELLPGGGQAHHKMDCILTPALIGSRCRIRGARQHQAKQST*
Ga0182183_109427313300015270Switchgrass PhyllosphereMVFPQISSIFNLQAIFSIELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPAKQST
Ga0182100_108906423300015280Switchgrass PhyllosphereMTIIEFSEKYKQLATNVVFPRISSIFDLQAICCVELLPGGGQGHHKMDCILTHAFIGSRCRIRGARQHPAK
Ga0182184_107430813300015301Switchgrass PhyllosphereYKKLATNVVFPRISSIFNPQAIFIVELLPGGGQAHHKMDCILTPAFIGSTCRITGAHQHPAKQST*
Ga0182162_106400813300015310Switchgrass PhyllosphereVVFPRISSIFDPQAIFNVELLPDGGQTHHKMDCILTPAFIGSICRIRGARQHPA
Ga0182136_107655013300015317Switchgrass PhyllosphereISSIFDPQAIFSVELLPDGGQAHHKMDRILTPAFIGSRCRITGARQHPAKQST*
Ga0182136_110655713300015317Switchgrass PhyllosphereLATNVVFPRISSIFDLQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHTAKQST*
Ga0182130_110152413300015319Switchgrass PhyllosphereFDPQAIFSVELLPGGGQAHHKMDCTLTPAFIGSRRRIRGARQHLAKQSI*
Ga0182130_111233513300015319Switchgrass PhyllosphereMVFTRISSIFDLLAIFSVELLPGGGQANHKMDCILTPAFIGSRCRIRGARQH
Ga0182134_106703313300015324Switchgrass PhyllosphereMVFTRISLKFDPQAIFSVELLPGGGQAHDKMDCILTPTFIGSRCRIRGARQHLAKQST*
Ga0182148_112236913300015325Switchgrass PhyllosphereMVFPRISSIFDPQAIFSVELLPGGVQAHHKMDCTLTHAFIGSRRRIRGARQHLAKQS
Ga0182114_112527413300015327Switchgrass PhyllosphereNELTIIEFSKKYKKLATNVVFPRISSIYDPQAIFSVEVLPGGGQAHHKLDCTLTPAFIGSRCRIRGARQHPAKQST*
Ga0182135_115401513300015329Switchgrass PhyllosphereKYKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDRILTLAFIGSRCRIRGARQHPAKQTT*
Ga0182152_108341613300015330Switchgrass PhyllosphereYKQLATNVVFPQISSIFDLQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCGIRGARQHPAKQST*
Ga0182152_111718413300015330Switchgrass PhyllosphereSIFDPQAIFSVELLPGGGLAQHKMDCILTPAFIGSRYGIRGACQHPAKNPLNRGS*
Ga0182147_113449613300015333Switchgrass PhyllospherePRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCGIRGAR*
Ga0182147_116719713300015333Switchgrass PhyllosphereDPQAIFSVELLPGGGQANHKMDFILTPAFIGSRCRIRGAHQHPVKQST*
Ga0182150_114294413300015336Switchgrass PhyllosphereATNVVLPRISSIFDPQTIFSVELLPGGGQAHHMMDFILTPAFIGSRYRIRGPHQHPAKQST*
Ga0182151_111031013300015337Switchgrass PhyllosphereFPRISSIFDPQAIFSVELLPDGGQAHHMMDFILTPTFIGSRCRIRGARQHTAKQST*
Ga0182137_108856313300015338Switchgrass PhyllosphereDPQAIFIVELLPGGGQAHHKMDCILTPAFIGSRCGIRGACQHPDSNPLNRGS*
Ga0182149_106088613300015339Switchgrass PhyllosphereMNSN*IFSVEILPGAGQAHHKMDYTLTPAFIGSI*RIGGAHEHPAKQSI*
Ga0182115_128911113300015348Switchgrass PhyllosphereQAIFSVELLPGGGQAHHKMDCILTPAFIGSRFRIRGARQHPDKQST*
Ga0182185_117956913300015349Switchgrass PhyllosphereVVFPWISSIFDPQAIFNVELLPGGGQAHHKMDYILTPPFIGSRCRIRGARQHPAKQS
Ga0182185_117965813300015349Switchgrass PhyllosphereMWYSPRISLILDPQAIFSVELLPGGGQAHHKMHCILTPAFIGSRCRIRGARQ
Ga0182169_113455713300015352Switchgrass PhyllosphereFSKKYKHLATNLVFPRISSIFDPQAIFSVELLPGVGQAHHKMDCTLTPAFIGSTRRIRGARQHLAKQSI*
Ga0182169_129609113300015352Switchgrass PhyllosphereVVFPRISSIFDPQAIFSVELLPGEGQAHNKLDCALTPAFIGSRCRIEGSRQHPAKQSI*
Ga0182169_129766913300015352Switchgrass PhyllosphereQLATNVVFLRISSIFDPQAIFSVELLPGGDQAHHKMDCTLTPAFIRSKYRIRGARQHPAKQSI*
Ga0182179_125289113300015353Switchgrass PhyllosphereQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCGIRGARQHLAKQST*
Ga0182179_125438113300015353Switchgrass PhyllosphereVVFPQISSIFDPQAILSVKLLPGGGQAHNKMDCILTPAFIGCRCRIKGARQHPAKQS
Ga0182179_130627613300015353Switchgrass PhyllosphereMVFPRISSIFDPQTIFSVELLPGGAQAHHKMDCILTPTFIGSRCRIRGARQH
Ga0182179_131566713300015353Switchgrass PhyllosphereDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSIWRIRGARQHPAKQST*
Ga0182197_112898813300017408Switchgrass PhyllosphereYKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKVDCNLNPASIGSRYRIRGARQHPAKQST
Ga0182197_114840913300017408Switchgrass PhyllosphereFDPQAIFSVELLPGGDQAHRKMDCILTPAFISSRCRIRRARQHPAKQSI
Ga0182199_113248813300017412Switchgrass PhyllosphereYKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPTFIGSRCRIRGARRHPAKQST
Ga0182199_113919813300017412Switchgrass PhyllosphereKYKQLATNVVFPRISSIFDPQAIFIVEFLPGGGQAHHKMDCILNPVFIGSSCRIRGARQHPAKQST
Ga0182196_115828513300017432Switchgrass PhyllosphereRISSIFDPQAIFIVELLPGGGQAHHKMDCILNPTFIGSICRVRGARQRPAKQST
Ga0182194_108749313300017435Switchgrass PhyllosphereVVFPRISLIFDPQVIFSVELFPDGDQADHKMDCILTPAFIGSRCRIRGAHQH
Ga0182212_107765613300017691Switchgrass PhyllosphereDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGAQSTSGQAIHLTVEASTRKMGLVR
Ga0182216_108535913300017693Switchgrass PhyllosphereVVFPRISSIFDPQAIFSVELIPGGAQAHHKMDCILTPAFIGSRCRIRGARQHPAKQS
Ga0182216_113990213300017693Switchgrass PhyllosphereKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFISSRSRIRGARQHPA
Ga0182216_116963213300017693Switchgrass PhyllosphereKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCIFNPAFIGSRSRIRGARQYPAKQST
Ga0182178_100192313300020023Switchgrass PhyllosphereDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSTCRIRGARQHPAKQST
Ga0182178_100249313300020023Switchgrass PhyllosphereVFPQISSIFDPQAIFSVELLLGGGQAHQKMDCILTPAFIGSRCGISGARQHPAKQST
Ga0268328_101651113300028050PhyllosphereMVFPQVSSIFDLQAIFSVELLLDGGQAHHKMDCILTPTFIGSRCRIRGARQHPAKLST
Ga0268328_105078413300028050PhyllosphereVVFPRISSIFDPQAISSVELIPGGGQANHKMDFILTPAFIGSRCRIRGAHQHPAKQS
Ga0268330_104162013300028056PhyllosphereLATNLVFPRISSIFDPQAIFSAELLPGGGQAHHKMDCILNPAFIGSRCRVRGSRQHPAKQST
Ga0268330_104732213300028056PhyllosphereMVFPRISSIFDPQAIFSVKLLPGGGQAHHKMDCILTPTFIGSSCGIRGARQYP
Ga0268330_105758613300028056PhyllosphereKELATNVVFPWISSIFDPQAIFSVELLPGGGQAHHEMDCILTPAVIGSRCRIRGARQHPAKQST
Ga0268332_103656613300028058PhyllosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPIFIGSRCRIRGARQHPAKQ
Ga0268332_105177513300028058PhyllosphereKQLATNVVFSRISSIFDPQAIFNVELLPGGGQAQHNMDCILNPAFIVRRSRIRGVRQHPAKQST
Ga0268342_104013113300028062PhyllosphereMVFPWISSIFDPQTIFSVELLPGGGQAHHKMDCILTPAFIGSRCRLRGARQHPAKQST
Ga0268340_103193513300028064PhyllosphereDTQAIFSVDLLSGGGQAHHNMDCILTPAFIGSRCRIRGARQHPAKQST
Ga0268323_100766313300028471PhyllosphereKQLATNVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCFLTPAFIGSRSRIRGARQHPAKQST
Ga0268315_100533613300028472PhyllosphereMVFPRISSIFDPQSIFSVELLPGGGQAHHMMDSILTTAFIGSRCRIRGARQYPAKQ
Ga0268315_102272613300028472PhyllosphereMVFPRISSIFDPQTIFSVELLPGGGQAHHKMDCILTPALIGSRCRIRGARQHQAKQST
Ga0268331_102515513300028474PhyllosphereMVFPRISSIFDPQAIFRVELLPCGGQAHRKMDCILTPAFIGSTCRIRGARQHPAK
Ga0268327_100197313300028475PhyllosphereNPQAIFSVELIPGGGQANYKMDYALTPAFIDSIXRIGGARQHPSKQSI
Ga0268327_101936013300028475PhyllosphereKYKQLATNVVFPRISSIFDPQAIFSVELLLGGGQAHHKVDCNLNPEFIGSRCRIRGAR
Ga0268327_102578513300028475PhyllosphereKQLETNVVFPRISSIFDPQAIFSVELLPGGGQGYHKMDCILTATFIGSRCRIRGARQHPAKQST
Ga0268311_102712613300028529PhyllosphereVVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRSRIRGARQDPAK
Ga0214493_116815113300032465Switchgrass PhyllosphereMVVPRISSIFDPQAIFSVELLPGGGQAHHKVDCNLNPAFIGSRYRIRGARQHP
Ga0214494_109552613300032699Switchgrass PhyllosphereLATNVVFPRISSIFDPQAIFTVELLAGGGQAHHKVNCSLTPTLMGSSCIISGAHQHPAKQST
Ga0314743_110118113300032844Switchgrass PhyllosphereMVFLRISSIFDPEAIFSVIFLPGGGQAHHKMDCILTPAFIGSRCRIRGARQHPA


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