3300002541: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061316 | Ga0006567
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126842170
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F025338	Metagenome / Metatranscriptome	202	Y
F026621	Metagenome / Metatranscriptome	197	Y
F070666	Metagenome / Metatranscriptome	123	Y
F088752	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25329J36429_1009093	All Organisms → cellular organisms → Bacteria	2130
JGI25329J36429_1026693	All Organisms → cellular organisms → Bacteria → Proteobacteria	763
JGI25329J36429_1036879	All Organisms → cellular organisms → Bacteria → Proteobacteria	580
JGI25329J36429_1042925	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25329J36429_1009093	JGI25329J36429_10090932	F088752	MMKVLQSVYNQITNILKENNVLMNITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDESYKYTNFYEEGDE*
JGI25329J36429_1020266	JGI25329J36429_10202662	F025338	MSVSGADRTRKLLTVGVGTVLIVVMGAVLIAGFRLATQMNANVAALQTASMLQTYPAALAQHLTSLRDRLEARAYAGQALADLRTTVESFDRDLKRLASGPAEGPMQIDQAMMLWRQYAPVLEPVLAFNGQPYIDTDEAGSVLSKEGLEHYADVKRAHLFARENAD
JGI25329J36429_1026693	JGI25329J36429_10266931	F026621	MILRQLQDLIGGIYDVSVAHDVYDFLVTDRGHLPAAARSNPSDEALIVAQDSDSV
JGI25329J36429_1036879	JGI25329J36429_10368792	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVE
JGI25329J36429_1042925	JGI25329J36429_10429251	F070666	VVFPRISSIFDPQAIFSVELLPGGGQAHHKMDCILTPAFIGSRCRIRGARQYPAKQST*