NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021497

3300021497: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_0-1_MG



Overview

Basic Information
IMG/M Taxon OID3300021497 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217611 | Ga0193945
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_0-1_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124893804
Sequencing Scaffolds39
Novel Protein Genes43
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Bacteria3
Not Available16
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon WOR_SM1_86-21
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → unclassified Coxiellaceae → Coxiellaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004928Metagenome / Metatranscriptome418Y
F005815Metagenome / Metatranscriptome389Y
F007123Metagenome / Metatranscriptome357Y
F008731Metagenome / Metatranscriptome329Y
F008816Metagenome / Metatranscriptome327N
F010065Metagenome309Y
F012457Metagenome280Y
F012654Metagenome278Y
F023489Metagenome / Metatranscriptome210Y
F024115Metagenome / Metatranscriptome207Y
F029111Metagenome / Metatranscriptome189Y
F037258Metagenome168Y
F037736Metagenome / Metatranscriptome167Y
F039151Metagenome / Metatranscriptome164N
F042074Metagenome159Y
F054010Metagenome140Y
F058118Metagenome135N
F058208Metagenome / Metatranscriptome135Y
F063604Metagenome / Metatranscriptome129Y
F063840Metagenome / Metatranscriptome129Y
F064729Metagenome128Y
F065231Metagenome / Metatranscriptome128N
F068689Metagenome / Metatranscriptome124N
F070006Metagenome / Metatranscriptome123N
F070128Metagenome / Metatranscriptome123Y
F074892Metagenome / Metatranscriptome119Y
F074897Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F077948Metagenome / Metatranscriptome117Y
F081351Metagenome114N
F082730Metagenome / Metatranscriptome113Y
F085639Metagenome111N
F085725Metagenome111Y
F087210Metagenome / Metatranscriptome110Y
F090406Metagenome108N
F090407Metagenome108Y
F099388Metagenome / Metatranscriptome103N
F104552Metagenome / Metatranscriptome100Y
F105203Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193945_1001394All Organisms → cellular organisms → Bacteria → Proteobacteria3763Open in IMG/M
Ga0193945_1001434All Organisms → cellular organisms → Bacteria3717Open in IMG/M
Ga0193945_1001569All Organisms → cellular organisms → Bacteria3554Open in IMG/M
Ga0193945_1003349All Organisms → cellular organisms → Bacteria → Proteobacteria2407Open in IMG/M
Ga0193945_1004259Not Available2110Open in IMG/M
Ga0193945_1006232All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon WOR_SM1_86-21697Open in IMG/M
Ga0193945_1006485All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1661Open in IMG/M
Ga0193945_1007013All Organisms → cellular organisms → Bacteria1588Open in IMG/M
Ga0193945_1014034Not Available1065Open in IMG/M
Ga0193945_1017617All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon935Open in IMG/M
Ga0193945_1019203All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria890Open in IMG/M
Ga0193945_1021277Not Available839Open in IMG/M
Ga0193945_1024662All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → unclassified Coxiellaceae → Coxiellaceae bacterium773Open in IMG/M
Ga0193945_1024696Not Available772Open in IMG/M
Ga0193945_1024749Not Available772Open in IMG/M
Ga0193945_1026905All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria737Open in IMG/M
Ga0193945_1027986Not Available722Open in IMG/M
Ga0193945_1029200All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.705Open in IMG/M
Ga0193945_1030030All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis694Open in IMG/M
Ga0193945_1031560All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta676Open in IMG/M
Ga0193945_1031619All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium675Open in IMG/M
Ga0193945_1032850Not Available662Open in IMG/M
Ga0193945_1034518All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium644Open in IMG/M
Ga0193945_1034784Not Available642Open in IMG/M
Ga0193945_1034887All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes641Open in IMG/M
Ga0193945_1035984All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium631Open in IMG/M
Ga0193945_1036248Not Available628Open in IMG/M
Ga0193945_1036366All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis628Open in IMG/M
Ga0193945_1037224All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria620Open in IMG/M
Ga0193945_1038519Not Available609Open in IMG/M
Ga0193945_1040814Not Available591Open in IMG/M
Ga0193945_1041526All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria586Open in IMG/M
Ga0193945_1044232Not Available568Open in IMG/M
Ga0193945_1047310All Organisms → Viruses549Open in IMG/M
Ga0193945_1047934All Organisms → cellular organisms → Bacteria → Proteobacteria545Open in IMG/M
Ga0193945_1048738Not Available541Open in IMG/M
Ga0193945_1049304Not Available538Open in IMG/M
Ga0193945_1052998Not Available518Open in IMG/M
Ga0193945_1054613Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193945_1001394Ga0193945_10013942F004928MSQALHSIVSEPNHTVEIVVHITETLGEQQRGDLVAALEGNAGIATAEFCPLRYHLMLVRYDRDLYSSQDVLERVTSHDVSARLIGPV
Ga0193945_1001434Ga0193945_10014341F074892AFMMKKYAVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR
Ga0193945_1001569Ga0193945_10015691F064729WGGRRAMGDLKEWLKYWRKVISKCSKIHKDSKIHKKAYAELSGYLNSVEECANVGELDATVLWAVRFMQRMHELEKEIGLHVLEKRVHSTHKE
Ga0193945_1003259Ga0193945_10032591F099388YDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPGVQEEKMFEQARPKKIKSAGGSGARIL
Ga0193945_1003349Ga0193945_10033493F104552MLMCTASNPFCRRFAWRYVWALLLVLGLLVPAQAADAPEADALPQAKAALDRIEKQLASAETATEPELKTLEKEIAKVRSSALDCVQQAEQDAKKLDSELAILRPEKPADAKAAEETQSSEQPETPVSPDIARQLEDLQTRKTSLDGRVATCKLMLLRSNNLQSQLGDYLRSLQTRQLLVRGPTLVDVVQENLDNPKRWLDFTTQLAVTSTGWDEIHPVHLAVAVAVALLGFILGRIVPRRLRARAAHMKVEEEEVSAGLVQAVIACG
Ga0193945_1004259Ga0193945_10042592F037736LDGLQILWLLANPLWTHGIGESGSKTITGWLLMDAAAANHIWWLNTNPFTGLLLHINSYRIRHLPFGFLTASEFQSRSTCLIKK
Ga0193945_1006232Ga0193945_10062323F012654QYEKRADLTPGQQQLLYTLACVTIEEKHLQDYCDEHGTCYQVVGKSGDTYSRMRPEWQQLKEARHRKQIIITRLENWIGEGKEVADEADKYFG
Ga0193945_1006402Ga0193945_10064021F076890MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAVILD
Ga0193945_1006485Ga0193945_10064853F070006MQSKITQIEPKGTYTNASGTFNKYQVYLANGNNYQFLAKGDFKKQVGETIDFEITNEQYNTAKLIYNKPIQAVPTANREQIIVRQSMVKAAADFHASRPNADIETVIADATKLINFVNNG
Ga0193945_1007013Ga0193945_10070132F029111RDGGGGGNRTAGSSPDPDESPTVSRTGIDENTSKEPEENALVDILMTMSQIPDVNRELAEAGAMFAVLEALRRSGRR
Ga0193945_1010248Ga0193945_10102482F076890MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESAPGTSITLYTTPAAHPMPMGLDESRCARMDWKTYTLAVDPDEWNAFWQDDRNSPFEIGIAFLEDFHPLPLSAFGAAILDTGSADPLVSCGCFWR
Ga0193945_1013908Ga0193945_10139081F087210LMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAVRALKTR
Ga0193945_1014034Ga0193945_10140343F012457EMNKDLDRDALSAVRGGRNSIEQGGVYAPVANASGGFSFGSPTTIVSAPVNAPVAVLSDNDLNLKLANKTSNVLGSLGTAIWQ
Ga0193945_1017617Ga0193945_10176172F010065VRGESGISFTGLYICGVISLVTLALKLSVIDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSETSYWFWLMSGKVEVLAAFGVLSVLALFAYWLRLGRVLKASD
Ga0193945_1019203Ga0193945_10192031F008731MFVLFATKPLNDGTNGFRFNFAGVKGLTRKRKHTSRGIKFSSQECMKAFHFGKRSIYIERKPNRNTERKLRH
Ga0193945_1021277Ga0193945_10212773F077948MKDFAHKLHKPQQPKPWTDVAREMTENLIFVIATVLALVI
Ga0193945_1024662Ga0193945_10246621F058208FAGQEQQRQAQLGTGMLAAGYVPQAQLLNALQPGMTAAEQRRQAISQQAGTYGQTYASGLEALLQAGLGQANIAGGVGGNIASAALGGLFS
Ga0193945_1024696Ga0193945_10246962F029111RGGGGGNRTAGSSPDSDDSQTVSRTGIDENTSKEHERNALPDILMTMSQIPDVNREFAEVGAMFRVLDVLRRSGRR
Ga0193945_1024749Ga0193945_10247491F054010MKKKTPTPLTHSSSRKLPVIKIVSTEDEMFTKMNLEMEDETHDMLVKWGKEVASDEDYISIAIRAGLEEYMDSIEDSSEKIW
Ga0193945_1026905Ga0193945_10269052F070128GGFGSLAAGELDATAIMALSLASSLILLDLAGKPAPRSVRAIVGFALLATAVGAALVMVYEILSR
Ga0193945_1027986Ga0193945_10279862F007123KADAELTKRAEEALPNFNIEVAKTLIAKFDTDEAVMEALKGADAVFGESMEEFGKSDADGNFATAQDKLDALVKSYMDENKIKKSQYAVAYAAVAKTDEGKALINKSYKGE
Ga0193945_1029200Ga0193945_10292001F039151DILMLHTKHITLTNATEQTLFTIPTGYTIHIVYIFIANHGGSTNQVSLWWETGGVDQMYFFDSTSIGSGNKEILGGQNDKGIFVLHNGDTVKTQASSATGQMEVAVTFELLERPTAFSNFNGS
Ga0193945_1030030Ga0193945_10300301F090406LLKGSLSLFLLLVIGACSTTLTSVDDKGGNVYALPAEVADQMLKDAVSTEIPSGTLRRGSSPYPSYIGEVTWGSLDKDTITASARPAKGRKIDGTVVDGYVFEVNRKGTAPATGESTVKRIFAKLQQDAELTGTGAAFIEFTD
Ga0193945_1031560Ga0193945_10315601F001488FPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSTHNKFMNQKSQNIEPDEYITIKLAYGSSVSQEKK
Ga0193945_1031619Ga0193945_10316192F081351GSVARAPSSAARVHSECTPSAKSRQVAPTTREPASGRRNCRWFFECEKKCSARATFGGAKPITRVMVDDERSNLAGLRRKAAEKTPYPYFLERLEDIEAWLKAGFSVRSVWRIYSDKSVPFPGSYRSFLRYCQEHCESASAPRRKAPNAPEATPGRAVSVLGQGKRYPPPRTRPPGLAPEQIQSMMDPDRDLAPKR
Ga0193945_1032850Ga0193945_10328501F063840MGGYELHDQLSEQFFRPAGGYFANFSSSGGSTSEEIYSRQALYSSYTSI
Ga0193945_1034518Ga0193945_10345182F105203LNMQQAKHAEQMVNRFRELVEESGDSLSVNHYNELKLIIEAGLDTALLENMARISERLTVLAHDIQHNADFFE
Ga0193945_1034784Ga0193945_10347841F058118MAIKLYNLEVLVDDLVYVGSDIRAKSQEDAVRILGIISGGEVTEDSEV
Ga0193945_1034887Ga0193945_10348871F008816MLFYTVLVLSYTLNGDYLQAKVIFPSARACGDALPAYYEPVYALDRNAIGQCLKTEVISASIKPKRKPL
Ga0193945_1035984Ga0193945_10359842F074897NDQAACKQWNDMTIDMDFSGFDPTIRRIADQLAGEALVSPKVLADELRQYVAELDSHKANAEFVDHDVAKRIAGLCWKLLEALPNEPDERQHRLTQLAVNYFVLAEDAHDDNYSLAGFEDDLQVVTAVVSELGLDHLLEQ
Ga0193945_1036248Ga0193945_10362481F085639MSELKCHLQNALNLTYVGSVLVGYVDDAVTICAGLTLMWWNIERALKVRKERQD
Ga0193945_1036366Ga0193945_10363662F090406KQMKYERNILWWIIVLVGLASCSTTLTSVDEKGGNVYALPPTVVDQMLKDAMSAEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFVKLQKDAELTGTGAAFVEFTD
Ga0193945_1037224Ga0193945_10372242F024115MQLTLPKILWFVAALGLAWGINQWRQQAAAHVLAAAQEGDRDAAESWVDRALRESQCELHEASDYLASEATRQYVRRPGYVETFVDKLYAGGAARLELCESDALGFRFAHYLVVTLPDDTSKHEQVIADAQSMVRRDAVVYRGVTSAEVEEIVRSSTLVGTRRVLVD
Ga0193945_1038519Ga0193945_10385191F023489TVTTSRCGCGANATKMVSAPSFHLNGSDGSFPGAHMKWVKEHEKAGKQ
Ga0193945_1040814Ga0193945_10408141F063604MIWALVLTICTSDGKCFNQTVQWFDKENECIRYKQIYEEIPKDGSWASVEYKCGIVGAME
Ga0193945_1041526Ga0193945_10415262F037258FRAIITQAIEDAMYDGLNKYEIIAKREAIHWLTSSSHDFKLICHYADIDYEYASMKFAKAMKLDMYQLKDKQINVIQKKPARSVKTSGQFRLNF
Ga0193945_1044232Ga0193945_10442321F082730MHKKISKVVKRIKKSEMPSIPKVKFKFKKGIHNIXLTNXKEPIDLLKKTHKNREVTYDIQDTFKAMDFNNEXFEAGTNNKKKVPINGNTRINTSKLD
Ga0193945_1047310Ga0193945_10473101F065231MMNNRVNIERLQTDVERLRVDVEKLKDSVRANIGKLNGNH
Ga0193945_1047934Ga0193945_10479342F005815MTMNVTRLTTYWTIDEAATAIEFLDRLRDALWETYGEQITEMHREAYDTRFQDINQCELGFDD
Ga0193945_1048738Ga0193945_10487381F090407ILGGILVLGYFNWSNTRDARRHTQKIFQQQRLVREVPDAHRLSQAVHLLRPSVRLGFDYFIETEDGKLPHISEWNTAGTMPTQAEFDEALRRVGSIDSKGYAAMRRQEYPSIEEQLDAAFKARHGDTSEQEELDSRIEQIKSKYPKSDDDL
Ga0193945_1049304Ga0193945_10493043F068689TEREVWYKVGQRSVINYLQQTYDDQLEQDIVTKQVQN
Ga0193945_1052998Ga0193945_10529982F085725VITISMNLLPLLFLFLISAVGIGIYLVFLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIYSGPIDKLNNIAALLLFFAILGGGMVFALNEEGRPPSMAAVIAHATMGLAGISLLIINLFL
Ga0193945_1054613Ga0193945_10546131F042074IQYISVGDREGLNKEMVATYRGARIYVDPNLGFTANGASGMGAKAVSAYLLSSDQFQLYVDTDGFFNVSEMMPVPGTATEAAMVFCRMQLVTGHLASHSILIDAEA

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