3300004183: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4

Overview

Basic Information

• IMG/M Taxon OID: 3300004183
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111067 | Ga0066403
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252939869
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001196	Metagenome / Metatranscriptome	749	Y
F004285	Metagenome / Metatranscriptome	445	Y
F012885	Metagenome / Metatranscriptome	276	Y
F025524	Metagenome / Metatranscriptome	201	Y
F033105	Metagenome / Metatranscriptome	178	Y
F063111	Metagenome / Metatranscriptome	130	Y
F066900	Metagenome	126	Y
F085867	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066403_1036577	Not Available	802
Ga0066403_1051245	All Organisms → cellular organisms → Bacteria	692
Ga0066403_1053361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	680
Ga0066403_1059481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	649
Ga0066403_1059926	All Organisms → cellular organisms → Bacteria	646
Ga0066403_1065255	All Organisms → cellular organisms → Bacteria	622
Ga0066403_1068183	Not Available	609
Ga0066403_1100805	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066403_1036577	Ga0066403_10365771	F001196	MTRSRFLPLITGFTLLACTGAAFAGSVADQFRGGAFGLSWSADKSAIQAKYPGGKWDKDELVGTDRYCAPSRQVLLKLPTQHQTKELCFLMGGDKTLGAATARLEPSLPSLLAVVNRSRTMFGDFDAVKRDEGAIQSRFTYMLWLKDAPIIAVVSSANGDDGKPNLVAFSVADEASLFAKDADKVSNKPSGK*
Ga0066403_1051245	Ga0066403_10512451	F063111	MLTTSVMVVRKMLDAVAGSAPRRFSTKGMLVPAMPANMQLNDIA
Ga0066403_1053361	Ga0066403_10533612	F004285	NRSLQVSPKVRLVGDAESEALRRKLEALEWKPENGFLKDQVIERPQAVASRGMRAA*
Ga0066403_1059481	Ga0066403_10594811	F033105	MEPRRTIREPTYHWPGGPTADDDPTPIESALAALKIGAILAAAITIAFIYLGTYAGIVAGQVESTIIVLAAFVSPSLIAAGRTA
Ga0066403_1059926	Ga0066403_10599262	F066900	MIKYQTLPDMLDDSASGDGAIVYLEGEGAEKALKLSELRRRALGILF
Ga0066403_1065255	Ga0066403_10652551	F025524	GRRVRMIAIQISDQLATATRSYLKAFGHPVPDEIIEMFASRDGPLLLEIRQAVALQRPIKAWLARSRMGPPLGP*
Ga0066403_1068183	Ga0066403_10681831	F012885	MPYRIRWEGHGVYRRFFGVITRAEFREAYEEMCNDIRYEGIRYIISDYLEGQPAADITERDLRAQANLERLRFYDSPDTVQAMVAADPKIVAFVKYYESLRVSPYCLADFATVAEARNWIAGNPRRG
Ga0066403_1100805	Ga0066403_11008051	F085867	MSERKPELPVGTRAPPRDKPGLPERPLQAREAVPRRGANKIGAATDGWDAYNDWLGRVRQPAPPSRQAVISKSLYSIASYKSWADKARGAFDKGK*