3300008788: Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i

Overview

Basic Information

• IMG/M Taxon OID: 3300008788
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117961 | Gp0126277 | Ga0103688
• Sample Name: Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71798817
• Sequencing Scaffolds: 16
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Hydrothermal Vent Plumes From The Guaymas Basin In The Gulf Of California
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent In Guaymas Basin In The Gulf Of California → Microbial Communities Of Hydrothermal Vent Plumes From The Guaymas Basin In The Gulf Of California

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Guaymas Basin in the Gulf of California
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000070	Metagenome / Metatranscriptome	2710	N
F000073	Metagenome / Metatranscriptome	2639	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F004094	Metagenome / Metatranscriptome	453	Y
F004471	Metagenome / Metatranscriptome	437	Y
F005390	Metatranscriptome	402	Y
F006651	Metatranscriptome	367	Y
F025643	Metatranscriptome	200	Y
F032157	Metagenome / Metatranscriptome	180	Y
F052865	Metagenome / Metatranscriptome	142	Y
F054098	Metagenome / Metatranscriptome	140	Y
F065401	Metatranscriptome	127	N
F072408	Metatranscriptome	121	Y
F073166	Metagenome / Metatranscriptome	120	N
F088224	Metatranscriptome	109	Y
F088935	Metagenome / Metatranscriptome	109	N
F092158	Metagenome / Metatranscriptome	107	Y
F092198	Metagenome / Metatranscriptome	107	N
F096688	Metagenome / Metatranscriptome	104	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103688_1004444	Not Available	1073
Ga0103688_1005781	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	960
Ga0103688_1006149	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	932
Ga0103688_1008684	Not Available	804
Ga0103688_1011732	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	703
Ga0103688_1014108	Not Available	646
Ga0103688_1015766	Not Available	615
Ga0103688_1018491	Not Available	571
Ga0103688_1019769	Not Available	554
Ga0103688_1020403	Not Available	546
Ga0103688_1020517	Not Available	544
Ga0103688_1021022	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea	538
Ga0103688_1021471	Not Available	532
Ga0103688_1022066	Not Available	526
Ga0103688_1022078	Not Available	526
Ga0103688_1022493	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103688_1004444	Ga0103688_10044442	F088935	MTSIGGLDVAFGARMQVVRTNVMCLALATTGLANSTTVPKYILNTYKEALKGTVIEPDFLFIYEIADLTGSGYTTAAVANSLFNQDNSGDGTADVTALEVNGVLRAIAQCPLAVNSAFADTTAAHAADGAAHTAHNYYDINGNLALESVLSLSAFALDDTAADQAATGVFSNV
Ga0103688_1005781	Ga0103688_10057812	F004094	VGGKELGHAESTDAFGSKDLGHLLVGGEELLVLRILKIVLLDVGPQLLNALSARGLLLANNVGQLGAELHGFGETGSLRHVDSLGLLFG*
Ga0103688_1006149	Ga0103688_10061491	F072408	PAPADAYCPTQEDFGSDGGVTWHGNGWTIVGGGGVHSKTTWNLNGGYIEFEMDTSAAQGGVNNNLYTTSPDNVQPRNECDIQGQGKPSCMEMDILEMNGNCMAASTVHTWPNHNGGCDRGGCASSMKIGGKFHVKAEFSTGGWMTVTLNGQKNEHYQPSPSKNSQNFVVQTMNSKGAQIQSSQWVGWVPGASQCPGGGNLGASRFTVENLVVKGSVVQGPEPKKCGQMMNSSTVLV*
Ga0103688_1008684	Ga0103688_10086841	F025643	LTETVKLNLLEVGAGSGKLEFSGSGIEGFTCSEKTYTKSGTAITLSDLSDCLPAHVAVSKTLYCSDSDTMKVTVKDDTVPIPVTATLKKVACAGREVFASCTGDADPVITGETCYKGSAGALGLTETVTVKVKDFASSAGHIDFSGDGIEAFTCSGKTFTKSGQDITFSDSSDCLPSGIVVSGVKYCSDSDTMKITVKD
Ga0103688_1011732	Ga0103688_10117321	F006651	YAATGEYGAKNCKADCLLGWCKSGCLSCTLPAQKTLATCTGFAAQTADPCEEEVKEEVAATGACTSGDQSALADPQNVGDKANTCGTTAFNIITGKFDHDKFNSCFTSSIGISSTCSECYAATGEYGAKNCKADCLLGWCKSGCLSCTLPAQKTLATCTGFTAATADPCELATV*
Ga0103688_1013612	Ga0103688_10136121	F000070	AVVRSDLERNVADTEARLKNDIRQKQQESFEKIASVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVEIQKSSDAVRKIEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCAASLTKGVVKFAQVVGVFPGPRFDDAEGMDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRFRNILDMIAKKADHS
Ga0103688_1014108	Ga0103688_10141081	F005390	EKFIHSSCTGQSSGWKGACTHLLFADGPKGYLYLADESKCCTTEPKQSSFNVTGPPPGGSETLAPSQGTFWNTFTYKGEVDFNGVYYKGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYDPSSLDSSAFDTSVFDIPEVCKKTSTTCAFP*
Ga0103688_1015204	Ga0103688_10152041	F073166	GGGIVSGLPSQLIYTNTEWKIVGPSLVLGAMITLAGRYISGITPRNPWLNPLVLILACGVGWFLAFQHGVNGGFYIWPVESGVIGGFFVGIGLVIAWRLKRIWMIIMLTTLAGGLGGLVFTLVGFQLLFISWQGILLLGIGIAIQIDSRKSSIEE*
Ga0103688_1015766	Ga0103688_10157661	F088224	GPVIFTYLNSAFGYDPGCNDQCTAPVTCGPPDENRNAAGMALLFTSSVPWLVCGALYMHFFYPHDMERIFERRRLEAEAAGSALNTELVS*
Ga0103688_1018491	Ga0103688_10184911	F096688	REIVFYAIGRMSLGQIMRGKFMRIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWVNWRRQNARNRGIDVAGHAQGGGDS*
Ga0103688_1018522	Ga0103688_10185221	F000073	NLKVTRTFLSWMDDHSKLRTVCEEGKGKLQWERDIPQDALDNLQNLANTDFKANLGKIIHDIYQTAHTMFSDMPQGDHKKRAKYRFASKTLMRILPEPQMSMINGLIEKKTISLDLYEILGKCTWKLV*
Ga0103688_1018594	Ga0103688_10185941	F000155	SAVGVGCLRRAANQYDSMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0103688_1019769	Ga0103688_10197691	F005390	LEVYWSEKFGAEKFIHSSCTGRSSWLDGPCVHMYFADGPVGYMYKQDESKCCLTEPTSGGSGPVETLSPSQGTFWNTFTYKGEVDFKGVNYEGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGSGPTDQGYPVSIGHTIWHDYDQSSFDTSAIDESVWAIPEACKTTTLTCAFP*
Ga0103688_1020403	Ga0103688_10204031	F032157	MAFMKAIKTMKVRKSKKVSFIAKGPRAKAVVFLGSGSATKTSGGFKKGDLMKSKRGKIVTKSQHAAGKKAFKNIKAWTTAVTKARKDLNITGFVAVKKGTPLYKAAKAIIGA*
Ga0103688_1020517	Ga0103688_10205172	F054098	ELIDVIVKEVEAANQSNSQGAADTDVQAEEDQAKEGAWELFTG*
Ga0103688_1020966	Ga0103688_10209661	F092158	GHYEGSVPFILGMNLIFPGDGTMNFDQNVKVAKQEIKCPTEKISETASAVTFPNTGTTGDCMGDALRAQKKDVSKFTIDINSDGSLTFHSDGWPDLKLTKKTEIIVV*
Ga0103688_1021022	Ga0103688_10210221	F065401	RDWDEALAPSKMVVDSVSLNSWLHMWARMCKGAAGIDDFPIWVQLIPRVIFKVICSREGGDVISRESLKNFYKNFTGLRVETRQKVATDGYRSMSANGDYELDYSSYKLLFSNFLLGRTIYGPGKYVFGAFDNRDMEEKYKIVYE*
Ga0103688_1021471	Ga0103688_10214711	F098669	METATRGRKQKWRLKEAEGLGRKRRIEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCLGRVFFN
Ga0103688_1022066	Ga0103688_10220661	F092198	LVGHLTDIHSHISYLCVTGGGVHAVIDAGSKESGNCTWKIPAGHTGYVHGFWYDVDSVAAGQGTAEIALQVAHAESSGVANSETWRTIAKVTLVEQDSDVVAASGGNGGTNAGSFSFPGNVPFVIPAKAMVRLAGKALSTAVAATCGFSMSVQGSGAGTTVTES*
Ga0103688_1022078	Ga0103688_10220781	F004471	MNKMKLAGQEIKVAGTKIDNAIIKKEDTKSRDVRQAKENWRFSKDKEGKFRRIIMSRLRTLSSNVLVTNLPEGKSDQLKKNIIEAGYTVKSITEGSQRPDHKPEDKPSTGYTMAHVELASVEEAIAAVANLHNTWPKKFGTKKNDKFGNARGLVFSLTGTKKEKPLEKSKA
Ga0103688_1022493	Ga0103688_10224931	F052865	KHMDLRGLGVVVLGLGLPSIATWMANSGVGSRVMSYVDMVPGMTTKYGKAVIAVGLTAGVSYLAAHFGAISAAEALTANMIAMGLVSVGLLKTMSLPVGQGLVDNLPAANFGGLAGSASYGYIGNYHEGVGAEMLPQPQSQQLFGVRANIF*