3300034138: Biocrust microbial communities from Mojave Desert, California, United States - 51SNC

Overview

Basic Information

• IMG/M Taxon OID: 3300034138
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136120 | Gp0356271 | Ga0334955
• Sample Name: Biocrust microbial communities from Mojave Desert, California, United States - 51SNC
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 383817356
• Sequencing Scaffolds: 29
• Novel Protein Genes: 30
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis	1
All Organisms → cellular organisms → Bacteria	4
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F001042	Metagenome / Metatranscriptome	794	Y
F003495	Metagenome / Metatranscriptome	483	Y
F006886	Metagenome / Metatranscriptome	362	Y
F011201	Metagenome / Metatranscriptome	293	Y
F014784	Metagenome / Metatranscriptome	260	Y
F017778	Metagenome / Metatranscriptome	238	Y
F018295	Metagenome / Metatranscriptome	236	Y
F035160	Metagenome / Metatranscriptome	172	Y
F035205	Metagenome	172	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334955_000102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	66265
Ga0334955_000160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	48553
Ga0334955_001164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	10021
Ga0334955_001220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	9716
Ga0334955_001575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis	8216
Ga0334955_002168	All Organisms → cellular organisms → Bacteria	6690
Ga0334955_002744	All Organisms → cellular organisms → Bacteria	5802
Ga0334955_003027	Not Available	5477
Ga0334955_003058	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	5456
Ga0334955_003963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	4666

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334955_000102	Ga0334955_000102_54319_55065	F083733	MKQTSDKLEFQEMFAFWGQLLVGGIFLVIGLLFGRSSGNFLVYLFAVVGLLLVIFVEIDTITFDKNLGLMTIKRHKPLLAKTKVVKHLIQDISGVEIQEMRSRESSNTYRVCLLLELGKRRVPLTSSFTNGLGDKHKKAEVIASFLDIRNYGLGGFASQETSSEELQWKTVEEEILHWETAIKSDPTDADAHIKLGLALIRQDKTKNKQQAMGYLKQAEAIFKSQGYDEEAMQVAQLHGMAYLGMLGK
Ga0334955_000160	Ga0334955_000160_8883_9122	F035160	VYLKEEYIMSVVQQDLTATEQERSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTDEQISSWLEGRAEGFPGGDIQPSCL
Ga0334955_001164	Ga0334955_001164_1725_2027	F044877	MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPLKLGKSNG
Ga0334955_001164	Ga0334955_001164_9242_9703	F017778	MAKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV
Ga0334955_001220	Ga0334955_001220_8143_8658	F083444	MSEVFSLEEVVWENTHLLPEHEKKVIYFVTTMQGESKTVLYIGFTINLRKNFKNHHRRIEFEFLNRIGYQINISWILLPDGTSQKEGQAVQMCYIRAFKPKLNDDQNSIAKVQDEELKKHIESRQQWRYEYLKKQIENWEQSGEDKDTIVKKIWEVCKEPFGDKNLNSLAT
Ga0334955_001575	Ga0334955_001575_3617_3859	F037589	MAIPRIIPASALTPGLATIIVSLPGRTIRSRVFMVEQRPHGAVNVAFASGDMVTLSARTMVGSIEYASHRPRSPRTRNAS
Ga0334955_002168	Ga0334955_002168_6329_6688	F001042	NFTSDFPEDSKTEADKKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENSLEEAIDLINLIVSASEAEGDNG
Ga0334955_002744	Ga0334955_002744_4681_4911	F000265	MAELRGAIAPPEIKAEWERAYQLYREAPGAPHDKKLDRTERISYVALKLNLTRKQAKRRIRNYEAWQRNISKGLVD
Ga0334955_003027	Ga0334955_003027_3252_3629	F001042	MTLTEDCPEGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSIRNKNDTACREFTEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNG
Ga0334955_003058	Ga0334955_003058_4370_4597	F037589	MTTPRIIPASALQPGLATIVVSLPGRTIRSRVFMVKLRHDVVDVAFTSGDMITLMARTAVGCIEPPAAKPRRRAS
Ga0334955_003963	Ga0334955_003963_2561_3322	F014784	MSNWQEDRTEKLREFFALDAARALLAPDSAAKLELRPEVDEGLRHFHIEGHVIPATEAVPLDDDYFARLYPVAPRDFTKTREHGHSYRQQILHGHAQHQGRVIGVETTTKPRYLPGNRQFYGTTYGHDAAADPFAAYMGRAGMMNGMRYAHNYLSLRTFINVVNEDWRARRLLPAGYRATVCPPAVFNLVGAIFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGDFSYVNEVEGEAEWSMMGFRLALVPE
Ga0334955_007024	Ga0334955_007024_1526_1777	F037589	MNGARPARMIPASALTPGLALIILRLPGRTIRSCAVMVQAQPHGVVQVAFASGDVLTLSARTMVGSIDRPARSRPPPRTRSAS
Ga0334955_008206	Ga0334955_008206_955_1281	F061723	MSEETTQNMPTNGGQSFEERVFARFDALDSSMGSVRAELRDIDARLQKLEARAYDTKPIWEQALKEIIETRRELSKRLDRIEAVVHETRADLRDAEDRIEKLESEPTR
Ga0334955_012039	Ga0334955_012039_438_788	F011201	MKKSKAKSKTRHGGVRPGAGRPRRWKHGPLKMIRVPVAFAEKILEIAQYMDQNDGRVPCTEAYEASIVISGHPSVSLSGEEIKELSAKRKAQKLAQKVMVGDEWVLVTDETFKEFL
Ga0334955_017884	Ga0334955_017884_1476_1742	F078146	LPEGTRDKQAQVIQAYYVRAFEPKLNIHQNTFAAVQVEELKKRIENLEQCKYDSLKKQVENWEQSGDDKDTIIKKIWEVGRDCLMVNI
Ga0334955_028773	Ga0334955_028773_550_936	F001042	MTTSHFIGGNFASDVPKDSEAEADENIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDVHLAENSISNKNNKASHEFIEKSSLLLESYQKAVPKLLGKAESSLEEAIDLINLIVSASEAEGDNG
Ga0334955_032142	Ga0334955_032142_2_181	F018295	MTTSHFIGGNFASDVPKDSEAEADENIVIDKLLINKLTELLINSIYSVHISRRSEIFLTS
Ga0334955_033662	Ga0334955_033662_586_1170	F066114	TQLCVHSPRPFRIRHGLTYEPDALVTSTTHQDGHVSKIISGRNVVLAFRLSGVEADFPNVATQNKIVQDLSTRTKNLANLKKWVLSEDQHLKYFKGEKQGTTGLYVSGRAKLNQPRADAWISKAEALIARADGGRGRSNVESAFVDNFFHHLTRSDDHGWCRDSLDAYVDFARAGMGGSLGRVLDTLSRAGTGA
Ga0334955_036367	Ga0334955_036367_136_585	F042189	VPDLYEVLLVDGGQRWHAGWLVDDDSETDVLMRDKGRVPVFGSRAGLEHHAQEHRLELLDDLPDEIDLDLGGWLSQGMPLPPTAEVSELWHLLYDDPVAGKALSGELLGEAYDDLVEEAPDWFSTHGPAARKALADAVSRLRGVLSRPA
Ga0334955_039045	Ga0334955_039045_318_782	F006886	MYQDFDASEFDYLSTATPQQFEQQNQTQTPEVTNIERFWNLTGNWGEFGSYFGAGLSASLVVRAVPALIPAAVILIPAASLGLLVHTLTADGPAKLRSQLILIAIGTALLSANWDAWLAWVVANSQLLIFSFLVVVIVLGFVGTQIWSRLNVSQ
Ga0334955_042249	Ga0334955_042249_52_438	F001042	MTTSHLIGGNFASDVPKDFEADTDNNIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLASLDMHLADFSISNKNDAACREFTEKSSLLLESYQKDVLKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334955_047182	Ga0334955_047182_145_609	F035205	MGADSKRVKFGLTWSQRRAFAFCVLGFQVLVWADALLNEGRFGGSWRTALVGLLLLGMAAATWWVGTSATRRGLVIHSVPSMVIPWDEVHEIEVELSLGISTVVVHHGERQRTRLSAPTTGPMGRDEQFQEKVRVLRTFWAAHRAAQQPGQQAA
Ga0334955_068122	Ga0334955_068122_383_631	F038578	MSDELVVLRGGVRDGESTTVQEGVRRLLAASDAPGLVEVYEANGETGNVAGNSEAALVFVHVGQEPAGDIAPELQHSPRPAP
Ga0334955_070976	Ga0334955_070976_182_775	F093150	MNNLYQKVAFASVCTALSFALVANKEAKAAVFTLTASPSFSVGDRNGQDGLGDYISGDVPLPVGIINGEGNRQEYRALYEFNLANLSLAPNTAISSVIFGVKANTISSYGRWSRLDAHGYIGNGQADVSDFEAGEYLDGRYLYSVLLNTTIPGIKPSPFFYFDVLPFISQSIKNNDTSAGFSLRIDDAYLTLNQDARL
Ga0334955_088802	Ga0334955_088802_84_284	F062389	VHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEALDLINLIVSASEAEGDNG
Ga0334955_090430	Ga0334955_090430_157_543	F001042	MTTSHLIGGNEASDVPKDFEADADDTIVINKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKEVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334955_094761	Ga0334955_094761_2_109	F050037	MIKKFLRDETGLELSEYAVAAALVALAVITAFTTLG
Ga0334955_126527	Ga0334955_126527_422_580	F018295	MTTSHLIGGNFVSDFPKDSEAEADDKIVIDKLLINKLTELLINSIYSVHISRR
Ga0334955_146627	Ga0334955_146627_51_308	F059598	LLQKQKIQGDKARMKLSKKKKVGGTGRPHKWASGKTKTIRVPVAFLKEVLAFISELDRREVDRREQQRKESFKPFIKLGHPDPWK
Ga0334955_156610	Ga0334955_156610_384_503	F003495	MKENNEKKMENCDEISKLIKAFPKDIAALDKRSVLAKVR