7000000738: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000738
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053332 | Ga0031023
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90833887
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F055792	Metagenome	138	N
F074985	Metagenome	119	N
F094006	Metagenome	106	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS015470_WUGC_scaffold_17731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	3472
SRS015470_WUGC_scaffold_25144	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	747
SRS015470_WUGC_scaffold_29988	All Organisms → Viruses → Predicted Viral	1938
SRS015470_WUGC_scaffold_46294	All Organisms → cellular organisms → Bacteria	2039
SRS015470_WUGC_scaffold_58257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	660
SRS015470_WUGC_scaffold_70399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2159

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS015470_WUGC_scaffold_17731	SRS015470_WUGC_scaffold_17731__gene_19366	F103434	AAVGGVAYHMVTFRPRRGRYLENGPHAVEVTVAVVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKGTENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTVAK
SRS015470_WUGC_scaffold_25144	SRS015470_WUGC_scaffold_25144__gene_28164	F094006	GTLEPAGPTGALYEPAVSMEAYIGELQTGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMHDISLCKPLSELFAEELEYAFNFGA
SRS015470_WUGC_scaffold_29988	SRS015470_WUGC_scaffold_29988__gene_34214	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYARRTTKLRIVTDPTTGEQKYLLD
SRS015470_WUGC_scaffold_29988	SRS015470_WUGC_scaffold_29988__gene_34215	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKIYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015470_WUGC_scaffold_46294	SRS015470_WUGC_scaffold_46294__gene_54378	F055792	MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS015470_WUGC_scaffold_58257	SRS015470_WUGC_scaffold_58257__gene_69475	F101360	GSVRKEDALRRAVIAAHVAKVASQEKKKALKELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKIPAPWFVAATSLDGFIKQTGEIPDGVELVTPDPRISARVSPAQEEAIRELITMGDISLIEIENTE
SRS015470_WUGC_scaffold_70399	SRS015470_WUGC_scaffold_70399__gene_89029	F018385	LRGLHPWSLNRISGTETMMADLINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQLGYCRVACPREKKILCFNWVNWTAYMFSHDGMNELVLMPDARRRTVSQLSFDNVPVKEVK