7000000700: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319

Overview

Basic Information

• IMG/M Taxon OID: 7000000700
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053285 | Ga0027921
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25812460
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F074985	Metagenome	119	N
F084342	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS011310_Baylor_scaffold_10036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	527
SRS011310_Baylor_scaffold_13322	All Organisms → Viruses → Predicted Viral	1366
SRS011310_Baylor_scaffold_15757	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1632
SRS011310_Baylor_scaffold_4490	All Organisms → Viruses → Predicted Viral	1511
SRS011310_Baylor_scaffold_7219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	867

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS011310_Baylor_scaffold_10036	SRS011310_Baylor_scaffold_10036__gene_11991	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVL
SRS011310_Baylor_scaffold_13322	SRS011310_Baylor_scaffold_13322__gene_16927	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKGLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAEEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREYGHWYTFRMSDDQKSKFTRHVMTNEKGHQSYDWVLDNVEWAADTIRYF
SRS011310_Baylor_scaffold_15757	SRS011310_Baylor_scaffold_15757__gene_21408	F084342	ATQCGAKLFLWGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS011310_Baylor_scaffold_4490	SRS011310_Baylor_scaffold_4490__gene_4472	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTVYMFTHDGLNELV
SRS011310_Baylor_scaffold_7219	SRS011310_Baylor_scaffold_7219__gene_8143	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRSAIKLRIVTDSETGEQKYLLDHIKAMHID