7000000698: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223

Overview

Basic Information

• IMG/M Taxon OID: 7000000698
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053283 | Ga0031315
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114525782
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F054110	Metagenome	140	N
F073671	Metagenome	120	N
F080164	Metagenome	115	N
F089055	Metagenome	109	Y
F094007	Metagenome	106	N
F103432	Metagenome	101	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3705407	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	563
C3728063	Not Available	672
C3734375	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	714
C3750397	Not Available	864
SRS024318_LANL_scaffold_30842	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1222
SRS024318_LANL_scaffold_47088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	861
SRS024318_LANL_scaffold_57406	Not Available	7927
SRS024318_LANL_scaffold_57648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1289
SRS024318_LANL_scaffold_68996	Not Available	1537
SRS024318_LANL_scaffold_68997	Not Available	777
SRS024318_LANL_scaffold_72400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1116
SRS024318_LANL_scaffold_78474	All Organisms → Viruses → Predicted Viral	2145
SRS024318_LANL_scaffold_78955	Not Available	742

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3705407	C3705407__gene_168359	F051213	MKASKLLWAVIVAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE
C3728063	C3728063__gene_176377	F080164	FPLITEKDASEIDAPYAWRMPVVPLRLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGGRQTVDEQVTLHLPGFEKTEKPLHYKGQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
C3734375	C3734375__gene_178618	F105380	FKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
C3750397	C3750397__gene_184451	F073671	MNKEAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR
SRS024318_LANL_scaffold_30842	SRS024318_LANL_scaffold_30842__gene_33762	F089055	CVTKTPEIKAREKEAREKLAVIFSDAEQRDNSKVNPELGKTAFDVANIPNNAAVDLCNKALGSYGKSLDRIKNSPLEAVWAIGTSLQHLRDEYKTEESCG
SRS024318_LANL_scaffold_47088	SRS024318_LANL_scaffold_47088__gene_54211	F094007	VFCGVDYLWISWYNSYYMKSKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS024318_LANL_scaffold_57406	SRS024318_LANL_scaffold_57406__gene_67675	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPITMQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPLFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE
SRS024318_LANL_scaffold_57648	SRS024318_LANL_scaffold_57648__gene_67996	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLQRKIFRSNPESFYTAIDIWLATIRVNSSPNAFNLIETVYYSHLNNLIATR
SRS024318_LANL_scaffold_68996	SRS024318_LANL_scaffold_68996__gene_83502	F103432	DDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHTLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFQQSIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSCPLLQGKRRNANFRTTEGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
SRS024318_LANL_scaffold_68997	SRS024318_LANL_scaffold_68997__gene_83504	F103432	DDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAEFNADLDALFHESIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSDWLLKTKAEPSLYAPSFRLLVWQQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS024318_LANL_scaffold_72400	SRS024318_LANL_scaffold_72400__gene_88707	F046433	MIELPPSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCKTTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLILSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKINELSLPALANIVRPYRNGEDFDGLSRFRQLLERE
SRS024318_LANL_scaffold_78474	SRS024318_LANL_scaffold_78474__gene_100295	F054110	VVLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
SRS024318_LANL_scaffold_78955	SRS024318_LANL_scaffold_78955__gene_101505	F080164	FPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLLLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS