Sample 7000000681

Basic Information
IMG/M Taxon OID	7000000681 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053258 \| Ga0031275
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160218816
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000681 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0053258 | Ga0031275

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160218816

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	106303323
Sequencing Scaffolds	27
Novel Protein Genes	27
Associated Families	23

Dataset Contents

Total Genome Size

106303323

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

National Institutes of Health, USA

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F063777	Metagenome	129	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F076191	Metagenome	118	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F105380	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2358143	Not Available	727	Open in IMG/M
C2374522	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	875	Open in IMG/M
C2375728	Not Available	888	Open in IMG/M
C2378548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	922	Open in IMG/M
C2384034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1000	Open in IMG/M
C2386610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1047	Open in IMG/M
C2386802	Not Available	1051	Open in IMG/M
C2400211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1402	Open in IMG/M
C2400367	Not Available	1406	Open in IMG/M
C2403775	All Organisms → Viruses → Predicted Viral	1548	Open in IMG/M
C2422797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	30819	Open in IMG/M
SRS018439_Baylor_scaffold_10999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1123	Open in IMG/M
SRS018439_Baylor_scaffold_19918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	8134	Open in IMG/M
SRS018439_Baylor_scaffold_23575	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	12209	Open in IMG/M
SRS018439_Baylor_scaffold_33398	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	3016	Open in IMG/M
SRS018439_Baylor_scaffold_34614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	832	Open in IMG/M
SRS018439_Baylor_scaffold_40509	Not Available	1652	Open in IMG/M
SRS018439_Baylor_scaffold_41146	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
SRS018439_Baylor_scaffold_43752	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1077	Open in IMG/M
SRS018439_Baylor_scaffold_43968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	807	Open in IMG/M
SRS018439_Baylor_scaffold_44204	Not Available	671	Open in IMG/M
SRS018439_Baylor_scaffold_47627	Not Available	7275	Open in IMG/M
SRS018439_Baylor_scaffold_56409	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	809	Open in IMG/M
SRS018439_Baylor_scaffold_57161	Not Available	1089	Open in IMG/M
SRS018439_Baylor_scaffold_59429	All Organisms → Viruses → Predicted Viral	2655	Open in IMG/M
SRS018439_Baylor_scaffold_61252	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57098	Open in IMG/M
SRS018439_Baylor_scaffold_6536	All Organisms → cellular organisms → Bacteria	2893	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2358143	C2358143__gene_153469	F054109	KSKKGVKVHTAFKIYPDDKARVQAMADKLDMSLSSYINKAVLEKVERDEKSEA
C2374522	C2374522__gene_159489	F046432	MWEMTESKLSNTISKYQLPMDGYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGIESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS
C2375728	C2375728__gene_159938	F072446	LFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMDLGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIITIDCEDTRSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYERESTYFTALWPVPDYKYNEMEW
C2378548	C2378548__gene_161029	F063777	KISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYFPDENSQEYKIFDDFCAKSNEYLDDGYLFYKLTDKKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLTDIKDFFWLDFDSETKIINGYNNEEQIEIAISE
C2384034	C2384034__gene_163109	F046431	LLSVIIAYSNVLVSWAAADSELTITLKPETNNMHLKWTGPLNSTYRVFQKKPGSNHFETIGLTDFSPEAINEEVKVLNIYPTADNNNTALSASGMTIPNVTVTYLDGQTETIPKSALLKAWMEGRNSK
C2386610	C2386610__gene_164108	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYDPEAKKTYDEALREFDKLVIPEDDILRAASECGIEMNRSIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGNQWSEASISVGYRMFLGLLKKDDKIINQLSRDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSMLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYEVNS
C2386802	C2386802__gene_164194	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRFTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILVGGNEIPSNHYGVLRDA
C2400211	C2400211__gene_169653	F067847	EPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL
C2400367	C2400367__gene_169715	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSKKGKK
C2403775	C2403775__gene_171171	F067846	KYDRRCCAEDAYNEAVEREIECIEEDIANNDSDAICAFSEKMFDDDEFLKAVALGNDFEEMRIKILTAMAEERLEQLEKDYKNGYILND
C2422797	C2422797__gene_180292	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTLPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVRTYKGGE
SRS018439_Baylor_scaffold_10999	SRS018439_Baylor_scaffold_10999__gene_13030	F077405	PTELFPRLLVAKQRGVFYGFIVLCQIKFVKKVFDWLKIIQK
SRS018439_Baylor_scaffold_19918	SRS018439_Baylor_scaffold_19918__gene_23856	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSLQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSFIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS018439_Baylor_scaffold_23575	SRS018439_Baylor_scaffold_23575__gene_28622	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVTRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAEDTLSEARLLDVFVCIVSYKLRFFRHK
SRS018439_Baylor_scaffold_33398	SRS018439_Baylor_scaffold_33398__gene_42187	F045567	VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVWATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKETPSLSSERGCVVERVVR
SRS018439_Baylor_scaffold_34614	SRS018439_Baylor_scaffold_34614__gene_43924	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWILALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIIMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
SRS018439_Baylor_scaffold_40509	SRS018439_Baylor_scaffold_40509__gene_52616	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNA
SRS018439_Baylor_scaffold_41146	SRS018439_Baylor_scaffold_41146__gene_53561	F047508	GTDIVVARTVEAIATDAVFVIEFVGEPIHIGMLRHRLVEGRIKYPYLRRIWEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
SRS018439_Baylor_scaffold_43752	SRS018439_Baylor_scaffold_43752__gene_57512	F046433	NDFVQFIETTKHYLPDYMENCAKELIDELAFLGMSELHFAATALAKRLRHHLEVDNKPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYKGRLKVYGGRGEIGKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDGSISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIACCAIEGRILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE
SRS018439_Baylor_scaffold_43968	SRS018439_Baylor_scaffold_43968__gene_57803	F046433	NDFVQFIEMIKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDDKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKE
SRS018439_Baylor_scaffold_44204	SRS018439_Baylor_scaffold_44204__gene_58234	F080164	RLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLDAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
SRS018439_Baylor_scaffold_47627	SRS018439_Baylor_scaffold_47627__gene_63551	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDV
SRS018439_Baylor_scaffold_56409	SRS018439_Baylor_scaffold_56409__gene_79075	F047127	TFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS018439_Baylor_scaffold_57161	SRS018439_Baylor_scaffold_57161__gene_80587	F054109	KRGMKVHTAFKIYPDDKARVQAMADKLDMSLSSYINKAVLEKVERDEKSEA
SRS018439_Baylor_scaffold_59429	SRS018439_Baylor_scaffold_59429__gene_85484	F105380	MSILQLDASQYVKRGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSHEESYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS018439_Baylor_scaffold_61252	SRS018439_Baylor_scaffold_61252__gene_91048	F081510	MKLPKINTKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMEQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQMHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS018439_Baylor_scaffold_6536	SRS018439_Baylor_scaffold_6536__gene_7429	F080164	MVGLTLCAAPQVTLRERASAFPLITEKDVSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSEGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000681: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160218816

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences