7000000666: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937

Overview

Basic Information

• IMG/M Taxon OID: 7000000666
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053242 | Ga0031304
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88881713
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045567	Metagenome	152	N
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F063777	Metagenome	129	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F097525	Metagenome	104	N
F099452	Metagenome	103	N
F099454	Metagenome	103	N
F103436	Metagenome	101	Y
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2913772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	623
C2946438	All Organisms → Viruses → Predicted Viral	1414
C2958183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3567
C2960017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5146
SRS022719_LANL_scaffold_14801	All Organisms → cellular organisms → Bacteria	228471
SRS022719_LANL_scaffold_16355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	42949
SRS022719_LANL_scaffold_16473	All Organisms → Viruses → Predicted Viral	2426
SRS022719_LANL_scaffold_17883	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	42654
SRS022719_LANL_scaffold_18651	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1000
SRS022719_LANL_scaffold_25068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	18332
SRS022719_LANL_scaffold_32389	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	13210
SRS022719_LANL_scaffold_39564	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	950
SRS022719_LANL_scaffold_40272	Not Available	128112
SRS022719_LANL_scaffold_41227	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1175
SRS022719_LANL_scaffold_41249	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	8196
SRS022719_LANL_scaffold_53566	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	2750
SRS022719_LANL_scaffold_65757	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	11933
SRS022719_LANL_scaffold_68463	All Organisms → cellular organisms → Bacteria	11021
SRS022719_LANL_scaffold_69319	All Organisms → cellular organisms → Bacteria	3531
SRS022719_LANL_scaffold_69894	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6852
SRS022719_LANL_scaffold_70689	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp.	2257
SRS022719_LANL_scaffold_70865	All Organisms → cellular organisms → Bacteria	2898

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2913772	C2913772__gene_162553	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTYSDDVQVRYYYTITDRIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKQL
C2946438	C2946438__gene_167371	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNILSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMAICIINKDIDKLASLCTGYLAITKDEVLVKKLMNESAMTAFKYMPDEDIHTVVDDINSRSVLARYLSRM
C2958183	C2958183__gene_168543	F103436	MITTSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGGRQYVAAVDLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
C2960017	C2960017__gene_168702	F077404	MNILKTAFAFFFALCFMMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFNVENKGNYLYTLFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTAYDRVELSNFVQSYGRQAALETANAWVMAGYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ
SRS022719_LANL_scaffold_14801	SRS022719_LANL_scaffold_14801__gene_28328	F097525	MQQKKIMFKIQNAYQKIIFSIHGNRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKGIMMKKHEL
SRS022719_LANL_scaffold_14801	SRS022719_LANL_scaffold_14801__gene_28481	F063777	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKENYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDVGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNNEQIEIAISE
SRS022719_LANL_scaffold_16355	SRS022719_LANL_scaffold_16355__gene_31437	F067846	MASFTAYDKAQEQYDAYGRAIEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEIRIKILVAMAEDRLEQLEEDYRKGYILND
SRS022719_LANL_scaffold_16473	SRS022719_LANL_scaffold_16473__gene_31759	F092229	MNEEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLFMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYHTIKEFKYLPLMNVLTQLTSSNPSGYILNHKLELVKENK
SRS022719_LANL_scaffold_17883	SRS022719_LANL_scaffold_17883__gene_34495	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSKYCNYTYIDSSTIRVMFDNASYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTERDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS022719_LANL_scaffold_18651	SRS022719_LANL_scaffold_18651__gene_35787	F051213	MKASKLLWTVVMALTFVLTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGILEENSSTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
SRS022719_LANL_scaffold_25068	SRS022719_LANL_scaffold_25068__gene_48532	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNVFNLYKDIINLDDVSLLAELRHTEWYRDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLSEDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
SRS022719_LANL_scaffold_32389	SRS022719_LANL_scaffold_32389__gene_62961	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDANLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS022719_LANL_scaffold_39564	SRS022719_LANL_scaffold_39564__gene_76546	F099454	MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS022719_LANL_scaffold_40272	SRS022719_LANL_scaffold_40272__gene_77862	F054109	MAGRPKSKKGAKVHTAFKIYPADKERAQAMADKLDISLSAYINRAVLEKVARDEKSED
SRS022719_LANL_scaffold_41227	SRS022719_LANL_scaffold_41227__gene_79719	F045567	MCQRDRCDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS022719_LANL_scaffold_41249	SRS022719_LANL_scaffold_41249__gene_79756	F105379	MVIQFQLSQSDIESLLSISKLLKCDKILYDRNYINSIIGVGPERSYFQTTSYMIDLDPSINNLLINSLDLKNLSKATDGADITKTNVPVFDWDTLYIKSCMDSLREYQVDSHIIARDDNFHESNCYSELMAGSASTGACRINVDKYLIDIPKSAMPTLKSDHVEAIVYEVPNRNFNVLRFKITKRNGIIVNQSMLFLPY
SRS022719_LANL_scaffold_53566	SRS022719_LANL_scaffold_53566__gene_102743	F085820	MKSSFLTLFAMLFLATTFFSCETDEPAPRVTWGEIVNPIEAFMYPRDLEVSEDQYDSRRWHILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTYKQIFDCHFKCGDRSIFAKPLGE
SRS022719_LANL_scaffold_65757	SRS022719_LANL_scaffold_65757__gene_127119	F081455	METTINKKDLGFINNLIRDCDDYININHRERMAEKLLRVAIEDSDIPPVEEIGMQNIEIVDSATDAIQQPLVNTDSSIAVNFSQMINKPEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTKTVVRAVRLLNYKMADQNAAMKFGQFVSEFNPECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
SRS022719_LANL_scaffold_65757	SRS022719_LANL_scaffold_65757__gene_127120	F080166	MEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR
SRS022719_LANL_scaffold_68463	SRS022719_LANL_scaffold_68463__gene_133220	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGEGIVEFVKLCKHLVLERTIDSKESLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKILPVKRSEW
SRS022719_LANL_scaffold_69319	SRS022719_LANL_scaffold_69319__gene_135402	F080164	MVGLALCAAPQVTLRERASAFPLITEKDPSEIYAPYAWRLPVVPLRLDNREIRNFAKYPALPSLSGGKLTVRVLIVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQTGRLVLCEYYGSHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS022719_LANL_scaffold_69894	SRS022719_LANL_scaffold_69894__gene_136926	F095629	MRELIICLCLFGCFGVANASTLVEQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK
SRS022719_LANL_scaffold_70689	SRS022719_LANL_scaffold_70689__gene_139356	F072446	MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGRVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLNCEDTESMTARYVVQLGQIREHELAEHIQPEMKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER
SRS022719_LANL_scaffold_70865	SRS022719_LANL_scaffold_70865__gene_139988	F071328	MSQKHWTFTHIIRYIEEYKRNPLLIERIKWKFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW