7000000665: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039

Overview

Basic Information

• IMG/M Taxon OID: 7000000665
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053241 | Ga0031257
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88868946
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F061926	Metagenome	131	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F092230	Metagenome	107	N
F097490	Metagenome	104	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F105376	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1975628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	502
C1982753	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	535
C1999346	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	638
C2038598	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1366
SRS016037_WUGC_scaffold_14581	All Organisms → cellular organisms → Bacteria	4786
SRS016037_WUGC_scaffold_16635	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	66326
SRS016037_WUGC_scaffold_25150	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	39407
SRS016037_WUGC_scaffold_27453	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	671
SRS016037_WUGC_scaffold_2784	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3542
SRS016037_WUGC_scaffold_28661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	29918
SRS016037_WUGC_scaffold_38427	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1165
SRS016037_WUGC_scaffold_38565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	2603
SRS016037_WUGC_scaffold_40702	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3104
SRS016037_WUGC_scaffold_40989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	4388
SRS016037_WUGC_scaffold_42063	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	920
SRS016037_WUGC_scaffold_42647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2652
SRS016037_WUGC_scaffold_43757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11328
SRS016037_WUGC_scaffold_43873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	4435
SRS016037_WUGC_scaffold_44399	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7992
SRS016037_WUGC_scaffold_5520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	92129
SRS016037_WUGC_scaffold_6546	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	73190
SRS016037_WUGC_scaffold_9815	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	36616

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1975628	C1975628__gene_108547	F051212	HSCNGTEKTMTTSPNTQKTSISEKQNAEKIERITYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSKLYNHLNLEK
C1982753	C1982753__gene_110957	F097490	VEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYIEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C1999346	C1999346__gene_116557	F105380	KQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKE
C2038598	C2038598__gene_130209	F043990	MIKKLGIIFIFGVIILGIAVYANYKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKPIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRNFGILIVDTTRKEICIYYQIL
SRS016037_WUGC_scaffold_14581	SRS016037_WUGC_scaffold_14581__gene_21526	F046433	MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHYLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGEKIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKGQYLQIY
SRS016037_WUGC_scaffold_16635	SRS016037_WUGC_scaffold_16635__gene_24489	F068942	FDNSHTKSIMIRKILSLPTLALCFTLGSTFFAGCNEDYIKNTDIKVRWSNVKNPKYGDAINITLKAEGETFTTVGDYSWISFRSDVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQPKQFEFSVSTIPPSLYIFKVRQPALPAKAQ
SRS016037_WUGC_scaffold_25150	SRS016037_WUGC_scaffold_25150__gene_37629	F051213	MALTFVFTSCDWVGDEPTIEGNLNKYFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS016037_WUGC_scaffold_27453	SRS016037_WUGC_scaffold_27453__gene_41611	F097490	KTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPGVSIMAKTLYHIRGEMIEGQIHHKKIDSIVCSVCIWDDICTEQYYAMRDIVLLPKKSIKKIRYKYNEEEYRKIETVHIDFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS016037_WUGC_scaffold_2784	SRS016037_WUGC_scaffold_2784__gene_4126	F030786	NVVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS016037_WUGC_scaffold_28661	SRS016037_WUGC_scaffold_28661__gene_43547	F103430	MIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI
SRS016037_WUGC_scaffold_28661	SRS016037_WUGC_scaffold_28661__gene_43550	F105376	MNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK
SRS016037_WUGC_scaffold_38427	SRS016037_WUGC_scaffold_38427__gene_60332	F043990	MIKKHGIIFTFGVIILGIVVYADHKIERSWTEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
SRS016037_WUGC_scaffold_38565	SRS016037_WUGC_scaffold_38565__gene_60574	F103431	MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG
SRS016037_WUGC_scaffold_40702	SRS016037_WUGC_scaffold_40702__gene_65110	F077404	MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYIPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTAYDRVELSNFVQSYGRQAALETANAWVMAGYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ
SRS016037_WUGC_scaffold_40989	SRS016037_WUGC_scaffold_40989__gene_65752	F073671	QAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK
SRS016037_WUGC_scaffold_42063	SRS016037_WUGC_scaffold_42063__gene_68413	F061926	MMIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPV
SRS016037_WUGC_scaffold_42647	SRS016037_WUGC_scaffold_42647__gene_69876	F041827	MKHFLSALALGCLLLSCNRDLENNENPAPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRPFTYELNWYNNIELVQDLRFIDNVKTRDLHNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYEEQ
SRS016037_WUGC_scaffold_43757	SRS016037_WUGC_scaffold_43757__gene_73569	F092230	MVDKLKTHLLKVILPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV
SRS016037_WUGC_scaffold_43873	SRS016037_WUGC_scaffold_43873__gene_74084	F073671	QAEHELAELHAQERSLEKALELVREKIRELINYTNKNKAAR
SRS016037_WUGC_scaffold_44399	SRS016037_WUGC_scaffold_44399__gene_76943	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIKADKHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS016037_WUGC_scaffold_5520	SRS016037_WUGC_scaffold_5520__gene_8364	F047508	MLGHRLVEGCVKYPYLRCIGEYLRHSFDTEDVGRVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAARVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS016037_WUGC_scaffold_6546	SRS016037_WUGC_scaffold_6546__gene_9850	F072446	MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETVTRQLNALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEIKLRIRDYSGRLKYPSGIVTLNCEDTESLTARYVVPLGQIRKDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPNKSVLQELPNKSVLENYQQYGFLPESTYFTTLWPLPEKEDEREL
SRS016037_WUGC_scaffold_9815	SRS016037_WUGC_scaffold_9815__gene_14476	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGMQKGGSRQAVDEQVTLHLPGFEKAEKPLLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS016037_WUGC_scaffold_9815	SRS016037_WUGC_scaffold_9815__gene_14477	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY