7000000659: Human stool microbial communities from NIH, USA - visit 2, subject 764002286

Overview

Basic Information

• IMG/M Taxon OID: 7000000659
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053235 | Ga0030494
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764002286
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115598026
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F082887	Metagenome / Metatranscriptome	113	Y
F088914	Metagenome	109	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C5419328	Not Available	533
C5431171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	574
C5472250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	791
C5474550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	808
C5529845	Not Available	1892
C5536008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2342
C5539278	Not Available	2724
SRS015854_WUGC_scaffold_23528	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	500
SRS015854_WUGC_scaffold_35358	Not Available	2737

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5419328	C5419328__gene_128613	F076190	VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQRESL
C5431171	C5431171__gene_133452	F062845	TEVTHITTRWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA
C5472250	C5472250__gene_150277	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNKFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR
C5474550	C5474550__gene_151192	F092228	DSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATK
C5529845	C5529845__gene_177499	F044554	PAHGCAAACGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
C5536008	C5536008__gene_181277	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGKFIVFSAWYAAKALEMGVK
C5539278	C5539278__gene_183691	F082887	MEKIKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAINSKEE
SRS015854_WUGC_scaffold_23528	SRS015854_WUGC_scaffold_23528__gene_38453	F076064	VRFAVGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY
SRS015854_WUGC_scaffold_31106	SRS015854_WUGC_scaffold_31106__gene_52205	F078004	EFKISSQHNITFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
SRS015854_WUGC_scaffold_35358	SRS015854_WUGC_scaffold_35358__gene_61400	F089005	LTKSKQRSIIAHALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI