7000000658: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738

Overview

Basic Information

• IMG/M Taxon OID: 7000000658
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053234 | Ga0031279
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49233588
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F054109	Metagenome	140	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2953812	All Organisms → cellular organisms → Bacteria → Proteobacteria	2918
C2953982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3173
SRS018969_WUGC_scaffold_53362	All Organisms → cellular organisms → Bacteria → Terrabacteria group	913
SRS018969_WUGC_scaffold_54702	Not Available	1838
SRS018969_WUGC_scaffold_56378	All Organisms → Viruses → Predicted Viral	1325
SRS018969_WUGC_scaffold_56664	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1370
SRS018969_WUGC_scaffold_56897	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1209

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2953812	C2953812__gene_100942	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLAPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILF
C2953982	C2953982__gene_101028	F103436	MMATSKYGWGSKSDAEILESLKDWVSKCDVSSKREALKKIDSAFALWGGAEYEAAVHLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE
SRS018969_WUGC_scaffold_53362	SRS018969_WUGC_scaffold_53362__gene_40278	F054109	KSKKGVKVHTAFKIYPADKARAQAMADKLDLTLSAYVNKAVLEKVARDEKSED
SRS018969_WUGC_scaffold_54702	SRS018969_WUGC_scaffold_54702__gene_42290	F032313	MYRFLILIFALTLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAIRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
SRS018969_WUGC_scaffold_56378	SRS018969_WUGC_scaffold_56378__gene_44997	F067846	MESQQAQWERKTFNDWDKQCSKEDDYNRAIEMEIEAIKEDIANNDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAED
SRS018969_WUGC_scaffold_56664	SRS018969_WUGC_scaffold_56664__gene_45510	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWILALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIIMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFET
SRS018969_WUGC_scaffold_56897	SRS018969_WUGC_scaffold_56897__gene_45916	F073671	TEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGQK