7000000656: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746

Overview

Basic Information

• IMG/M Taxon OID: 7000000656
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053232 | Ga0031123
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43776434
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Verophasmatodea → Areolatae → Bacilloidea → Bacillidae → Bacillinae → Bacillini → Bacillus	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F054109	Metagenome	140	N
F073671	Metagenome	120	N
F085821	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1341820	Not Available	770
C1354017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales	1135
SRS065310_LANL_scaffold_17602	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Verophasmatodea → Areolatae → Bacilloidea → Bacillidae → Bacillinae → Bacillini → Bacillus	26996
SRS065310_LANL_scaffold_6840	All Organisms → Viruses → Predicted Viral	1806

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1341820	C1341820__gene_68379	F085821	MNHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCLDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDTSTQKKLHHDLLNLWYECSKRQLLEQDKGKHDEAYIDTWNEANVNKTLSIIRSGETIASRKEDVAKHSKTLNDEYDQNVNLLYEYCRALLYTAETTQSQQELVAETQSHIALLKDLYKKVNKIK
C1354017	C1354017__gene_75520	F073671	MNKEQAEHELAELHEKERSLEKALELVRERIRETINYTNKNKAAR
SRS065310_LANL_scaffold_17602	SRS065310_LANL_scaffold_17602__gene_19971	F054109	MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEASTETN
SRS065310_LANL_scaffold_6840	SRS065310_LANL_scaffold_6840__gene_4536	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAA