7000000653: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160421117

Overview

Basic Information

• IMG/M Taxon OID: 7000000653
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053229 | Ga0031265
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160421117
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95757355
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F103430	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2686086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	617
C2694832	Not Available	668
C2706030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	752
C2715892	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	855
C2725200	Not Available	994
C2728504	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1060
SRS016740_Baylor_scaffold_12899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1026
SRS016740_Baylor_scaffold_20926	Not Available	1624
SRS016740_Baylor_scaffold_36176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	816
SRS016740_Baylor_scaffold_37010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	691
SRS016740_Baylor_scaffold_44668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	729
SRS016740_Baylor_scaffold_55252	Not Available	2366
SRS016740_Baylor_scaffold_56137	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	4285
SRS016740_Baylor_scaffold_61493	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1538
SRS016740_Baylor_scaffold_61742	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1190
SRS016740_Baylor_scaffold_63624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1178
SRS016740_Baylor_scaffold_7106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	27800
SRS016740_Baylor_scaffold_71317	Not Available	2244
SRS016740_Baylor_scaffold_73389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2632

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2686086	C2686086__gene_145291	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETEL
C2694832	C2694832__gene_147921	F081455	SDYINRKEKNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
C2706030	C2706030__gene_151293	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVKVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSRERGCVVERVVR
C2715892	C2715892__gene_154433	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
C2725200	C2725200__gene_157425	F103430	MKLITMKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLNELKEVLDQEAIAYQIENKINLI
C2728504	C2728504__gene_158526	F043235	AVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPKGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSTH
C2749453	C2749453__gene_166116	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDVLNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
SRS016740_Baylor_scaffold_12899	SRS016740_Baylor_scaffold_12899__gene_12949	F051211	MRIKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCALLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS016740_Baylor_scaffold_20926	SRS016740_Baylor_scaffold_20926__gene_21509	F068942	IQSSVLIDNPHKESVMIRKILSLPTLALCFTLCTALFAGCGENNEGFVTEVRWSNVKNPKYGDYINIRLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEQDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFKFSVSVTPPGTYFFNVRQPALPAKAQ
SRS016740_Baylor_scaffold_36176	SRS016740_Baylor_scaffold_36176__gene_40110	F066860	MTAKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAATFGIAEDKE
SRS016740_Baylor_scaffold_37010	SRS016740_Baylor_scaffold_37010__gene_41158	F094007	MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDVNSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS016740_Baylor_scaffold_44668	SRS016740_Baylor_scaffold_44668__gene_51066	F033081	MYPPDLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIVTIATIKALLLVPGLNQSVVGLLTRGLEAFLPAGWATGAAWIVGMAGVFLMGSFTNYTPSQRLLHKTKATRCEAYNIILLLALWEEQVFRSGSEKWSWRERVRASVCFGILHIANIWYSFAAGVALSVTGFGFLLVYLWCYRKYRSQIIATAAATTVHALYNAI
SRS016740_Baylor_scaffold_55252	SRS016740_Baylor_scaffold_55252__gene_65149	F105376	HIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK
SRS016740_Baylor_scaffold_56137	SRS016740_Baylor_scaffold_56137__gene_66370	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMELGKEAHLVFRATVHGDTINRQKRELEAISRQLNALTLTSIGTSPVLCGVKSIEAVGVAERGNTYDLSREMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLARIREDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTTLWPLPDYKYNEREW
SRS016740_Baylor_scaffold_61493	SRS016740_Baylor_scaffold_61493__gene_74034	F084342	LGGYLAVPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS016740_Baylor_scaffold_61742	SRS016740_Baylor_scaffold_61742__gene_74435	F068942	LFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ
SRS016740_Baylor_scaffold_63624	SRS016740_Baylor_scaffold_63624__gene_77389	F103436	MITTSKDGWCDKSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGARQYVEAVHLLEENKVFLEKSDWPYYALGIQILRARKHEFFNE
SRS016740_Baylor_scaffold_7106	SRS016740_Baylor_scaffold_7106__gene_6862	F081510	MKLPNVKTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKAGMITFAEVLDALGFDVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN
SRS016740_Baylor_scaffold_71317	SRS016740_Baylor_scaffold_71317__gene_91211	F105376	HIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQTQVRRK
SRS016740_Baylor_scaffold_73389	SRS016740_Baylor_scaffold_73389__gene_96140	F085820	MRSTFYLFAVLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK