7000000605: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 7000000605
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053177 | Ga0031054
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110148761
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F084342	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2964779	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	549
C2965969	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	553
C2967395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	558
C2971967	All Organisms → cellular organisms → Bacteria	576
C3012416	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	817
C3032146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1087
C3035372	Not Available	1154
C3041702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1329
SRS019028_WUGC_scaffold_3157	All Organisms → cellular organisms → Bacteria	191963
SRS019028_WUGC_scaffold_38024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1106
SRS019028_WUGC_scaffold_51759	Not Available	2228
SRS019028_WUGC_scaffold_55736	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	794
SRS019028_WUGC_scaffold_59390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2495
SRS019028_WUGC_scaffold_67592	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6247

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2964779	C2964779__gene_154867	F058221	NKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
C2965969	C2965969__gene_155343	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISMETMVSEENLDIERSDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKYK
C2967395	C2967395__gene_155902	F080165	MKSIKILLLLLSLIACNNKTKTISTLDLEKTIIGYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR
C2971967	C2971967__gene_157730	F061925	MSWEYSINLDSEEAVSSVVTDLKICELLSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C3012416	C3012416__gene_174688	F081454	LVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQK
C3032146	C3032146__gene_183584	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRD
C3035372	C3035372__gene_185064	F077403	LVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
C3041702	C3041702__gene_188089	F046431	VKVISIIIMVLSMIIAYSSTIISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASTFETIGLTDFNNIDEEVKVLNVYPVPTAVYNTPNVQVTYLDGTSEVIPKTALLKVWMEGRNSNRRWKYN
SRS019028_WUGC_scaffold_3157	SRS019028_WUGC_scaffold_3157__gene_1848	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIASDAEDEISKYLFGFYSIFEIKS
SRS019028_WUGC_scaffold_38024	SRS019028_WUGC_scaffold_38024__gene_42150	F070224	IYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGDSLVIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRSSGEVNRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH
SRS019028_WUGC_scaffold_51759	SRS019028_WUGC_scaffold_51759__gene_60411	F084342	HIVATQCGAKRFLLGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE
SRS019028_WUGC_scaffold_55736	SRS019028_WUGC_scaffold_55736__gene_66090	F081456	MFEEPPIYYVLISLIFLIVFFAISFATWLVWLTNVAFFVKLVITAIGALFAAMTVILYTISAE
SRS019028_WUGC_scaffold_59390	SRS019028_WUGC_scaffold_59390__gene_71987	F063778	PETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED
SRS019028_WUGC_scaffold_67592	SRS019028_WUGC_scaffold_67592__gene_89991	F047508	AIATDAVLVVEFVGEPVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP