7000000604: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764892411

Overview

Basic Information

• IMG/M Taxon OID: 7000000604
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053176 | Ga0031288
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764892411
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79214011
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073671	Metagenome	120	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3875840	Not Available	637
C3896493	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	824
C3911287	Not Available	1101
C3912805	Not Available	1145
SRS019894_WUGC_scaffold_20344	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	7415
SRS019894_WUGC_scaffold_34831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1527
SRS019894_WUGC_scaffold_38723	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5120
SRS019894_WUGC_scaffold_45324	All Organisms → Viruses → Predicted Viral	2032
SRS019894_WUGC_scaffold_47654	All Organisms → Viruses → Predicted Viral	3157
SRS019894_WUGC_scaffold_9248	All Organisms → Viruses	43120

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3875840	C3875840__gene_119305	F099452	TIFIGERLNRELILSSVNIFNLYKDVINLDDVSLLTDLRKTPWYKDWFIDDKRNSDLIDLSRFNFRSLERFEKAEYLRDAEHYDFEGVIEVDSYSLYDILAEDNGISLFGLAAMNILLNHGFFNNTDYQLYDIPDAYINDQEVCLYMCLLNKDNLDFMDKKTFDDTLLYDIVKDRICGAIYFSIYDSLNEDTRTRAM
C3896493	C3896493__gene_128552	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLYTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLK
C3911287	C3911287__gene_135954	F080164	FPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
C3912805	C3912805__gene_136802	F081455	METTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDTSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFKKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYAD
SRS019894_WUGC_scaffold_20344	SRS019894_WUGC_scaffold_20344__gene_20068	F099453	MLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLANVAYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
SRS019894_WUGC_scaffold_34831	SRS019894_WUGC_scaffold_34831__gene_35983	F103436	ILQVVEMITTSKDGWCDMSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGGRQYVAAVDLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
SRS019894_WUGC_scaffold_38723	SRS019894_WUGC_scaffold_38723__gene_40445	F095629	MRELIICACLLGCFGVANAAVPVDQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK
SRS019894_WUGC_scaffold_45324	SRS019894_WUGC_scaffold_45324__gene_47854	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSVNIFNLYKDIINLDDVSLLTDLRKTEWYKDWFTNDKRNSDLIDLSRFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEVPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIIKDRICGSVYFTIFDSLNEDTRTRAR
SRS019894_WUGC_scaffold_47654	SRS019894_WUGC_scaffold_47654__gene_50799	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGIIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR
SRS019894_WUGC_scaffold_9248	SRS019894_WUGC_scaffold_9248__gene_8827	F073671	MEKQQAEHELAELHEKERSLEKALELVREKIRELINYTDKNKEQK