7000000598: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 7000000598
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053170 | Ga0031085
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71460939
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F067846	Metagenome	125	Y
F085821	Metagenome	111	N
F094006	Metagenome	106	Y
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1755544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	596
C1764221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	648
C1778258	Not Available	763
C1792845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	980
C1794486	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1018
C1813218	All Organisms → cellular organisms → Bacteria	2508
C1815806	All Organisms → Viruses	4244
SRS024144_LANL_scaffold_17697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	3049

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1755544	C1755544__gene_101387	F047508	LVGEPIHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSS
C1764221	C1764221__gene_105927	F094006	MRGTLEPAGPTGALHEPTVSVEAHIGELQAGGIACRCLFAFGGRDLLAVAELGAKAPYAIDMYDIALCEPLSELFAEELEYAFNFGA
C1778258	C1778258__gene_113333	F085821	MDHIFEQLARLAETKKQQTAIAKFIEKGFKFTRQSDAQKFTFLVYDFFVAGNIPAMQLCIDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAETQSHIALLKDLYKKVNKIK
C1792845	C1792845__gene_121641	F101359	SKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
C1794486	C1794486__gene_122646	F105380	GRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGSRLVYNRLCKGRMMDDISADDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNSIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
C1813218	C1813218__gene_135165	F101358	MDGTPKERAIHPDTHIIPKHENVPQYLWNVLRSSGQLDEGWIDEEIITEDGVTLMRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVIVKDGRLQPVADATHAASQSSATEQETEVLPAQGDDTYEHLSGDSARQLVGSVAAKASGEVDNSLLVERALERVR
C1815806	C1815806__gene_137733	F105377	MEVRSEVRDFDDLPLLTPEEAFERAWEEGGSAHPVFDRGYRIRDLSSWKAVETLLRQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTATNVYVGGERRTVQAIRAHYSGD
SRS024144_LANL_scaffold_17697	SRS024144_LANL_scaffold_17697__gene_19487	F067846	MSIIAEWERQEFNKWDKQCSKQDDYNRAIEMEIEAIKEDIANGDDDVMCAFSEKMFDDEEFLKAVALGTDYEEMRIKILTAMAEERLEQLEKDYRNGYILNN