7000000568: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897

Overview

Basic Information

• IMG/M Taxon OID: 7000000568
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053133 | Ga0031108
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111531229
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F097490	Metagenome	104	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3209193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	633
C3211735	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	645
C3231509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	751
C3232781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	759
C3242494	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	834
C3266344	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1167
C3288411	Not Available	2790
C3289221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	3047
SRS051930_LANL_scaffold_2527	Not Available	709
SRS051930_LANL_scaffold_33340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3209193	C3209193__gene_165492	F047508	TVEAIATDAVLVVEFVGEPVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C3211735	C3211735__gene_166651	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
C3231509	C3231509__gene_175939	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGYTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYS
C3232781	C3232781__gene_176594	F059076	NDGKPLLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
C3242494	C3242494__gene_181276	F097490	MNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPGVSIMAETLYHIRGEMIEGQIHHKKIDSIVCSVCIWDDICTEEYYAMRDIVLLPKKSIKKIRYKYNEEEYRKIETVHIDFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3266344	C3266344__gene_193352	F043235	ELHQGAVNGDDIVQFRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C3288411	C3288411__gene_207324	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVSYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASERLRDEDTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
C3289221	C3289221__gene_208038	F097526	MQHFSAQPDETTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE
SRS051930_LANL_scaffold_2527	SRS051930_LANL_scaffold_2527__gene_2368	F077405	PTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKARLK
SRS051930_LANL_scaffold_33340	SRS051930_LANL_scaffold_33340__gene_36831	F051212	MKKFFFIFVLCWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSKLYNHLNLEK