7000000559: Human stool microbial communities from NIH, USA - visit 2, subject 763820215

Overview

Basic Information

• IMG/M Taxon OID: 7000000559
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053118 | Ga0030573
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763820215
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61166062
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F064725	Metagenome	128	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F083452	Metagenome	113	N
F089053	Metagenome	109	Y
F089590	Metagenome	109	N
F093883	Metagenome	106	N
F097493	Metagenome	104	Y
F102167	Metagenome	102	N
F105374	Metagenome	100	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C6732861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	629
SRS058723_Baylor_scaffold_14315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11897
SRS058723_Baylor_scaffold_3147	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5922
SRS058723_Baylor_scaffold_3323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2704
SRS058723_Baylor_scaffold_4974	All Organisms → Viruses → Predicted Viral	2082
SRS058723_Baylor_scaffold_5793	Not Available	1798
SRS058723_Baylor_scaffold_6163	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2229
SRS058723_Baylor_scaffold_7146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3592
SRS058723_Baylor_scaffold_8143	Not Available	2006
SRS058723_Baylor_scaffold_9312	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	962
SRS058723_Baylor_scaffold_9589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4861
SRS058723_Baylor_scaffold_9949	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2317
SRS058723_Baylor_scaffold_9978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	5609

Sequences

Scaffold ID	Protein ID	Family	Sequence
C6732861	C6732861__gene_72250	F047125	MDVVLLLMVLGVMLSVFWAADALDHMRREIIRQEGKRRGWWS
SRS058723_Baylor_scaffold_14315	SRS058723_Baylor_scaffold_14315__gene_36740	F097493	MKNGTAQFYERGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDDNFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
SRS058723_Baylor_scaffold_3147	SRS058723_Baylor_scaffold_3147__gene_7147	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRIWLDKYDDPTDKGMVNSPIQFMYLYLYYSFNK
SRS058723_Baylor_scaffold_3323	SRS058723_Baylor_scaffold_3323__gene_7621	F083452	MQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDTDPRKGLVRIRDGAGFREVERGGCLHQNYLNLLEEELGTKLSIDLIDKYVKRK
SRS058723_Baylor_scaffold_4974	SRS058723_Baylor_scaffold_4974__gene_11448	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV
SRS058723_Baylor_scaffold_5793	SRS058723_Baylor_scaffold_5793__gene_13285	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKD
SRS058723_Baylor_scaffold_6163	SRS058723_Baylor_scaffold_6163__gene_14022	F078006	MDNTLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVEYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNHNKKLFKEI
SRS058723_Baylor_scaffold_7146	SRS058723_Baylor_scaffold_7146__gene_16298	F078005	MKKSKFVKELERIIDMVKTGDDGFEYGGKVIFYKEDDDDYEISVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFTKAVTISEDEDDEDN
SRS058723_Baylor_scaffold_8143	SRS058723_Baylor_scaffold_8143__gene_18460	F093883	MEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE
SRS058723_Baylor_scaffold_9312	SRS058723_Baylor_scaffold_9312__gene_21050	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFYDKDMGGLRRLVSNAIMAVGLRNNPMTGDGNTAIK
SRS058723_Baylor_scaffold_9589	SRS058723_Baylor_scaffold_9589__gene_21715	F089053	MILCRAKRALFAFSVKLECVVDECRPVKGCIRKWIHGFAYGQPELSTAEEVNVKNMEAIL
SRS058723_Baylor_scaffold_9949	SRS058723_Baylor_scaffold_9949__gene_22479	F106193	LLNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVVSDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
SRS058723_Baylor_scaffold_9978	SRS058723_Baylor_scaffold_9978__gene_22558	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP