7000000554: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 7000000554
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053113 | Ga0031330
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100318872
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F061925	Metagenome	131	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F094006	Metagenome	106	Y
F094007	Metagenome	106	N
F103432	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2094871	All Organisms → cellular organisms → Bacteria	562
C2134725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	829
C2164478	Not Available	1494
C2177063	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2981
SRS058336_LANL_scaffold_11175	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	272773
SRS058336_LANL_scaffold_13008	All Organisms → cellular organisms → Bacteria	938
SRS058336_LANL_scaffold_16084	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2635
SRS058336_LANL_scaffold_21850	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1936
SRS058336_LANL_scaffold_22582	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	19062
SRS058336_LANL_scaffold_23015	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	968
SRS058336_LANL_scaffold_29856	All Organisms → cellular organisms → Bacteria	5615
SRS058336_LANL_scaffold_35531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	664
SRS058336_LANL_scaffold_38412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1661
SRS058336_LANL_scaffold_58691	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1454
SRS058336_LANL_scaffold_60633	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3173
SRS058336_LANL_scaffold_62740	Not Available	2177
SRS058336_LANL_scaffold_63046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3027
SRS058336_LANL_scaffold_9334	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	27405

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2094871	C2094871__gene_137294	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHNSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHR
C2134725	C2134725__gene_151660	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLI
C2164478	C2164478__gene_163469	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
C2177063	C2177063__gene_169411	F046432	MWEMTESKLSNIISKYQLPMGDYLVEIDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKP
SRS058336_LANL_scaffold_11175	SRS058336_LANL_scaffold_11175__gene_12243	F105380	MSILELDATQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS058336_LANL_scaffold_13008	SRS058336_LANL_scaffold_13008__gene_14675	F047508	MLGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKWSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVFFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS058336_LANL_scaffold_16084	SRS058336_LANL_scaffold_16084__gene_18189	F051213	MALTFVLTSCDPFSQNEPTIEGNRYKYFDSSAQRKSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
SRS058336_LANL_scaffold_21850	SRS058336_LANL_scaffold_21850__gene_25662	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSAPYDARFYTDKKKTIYISINSFSKNIFSALKSILAKQNYHLTDCETDKEVTLEHIFRSVI
SRS058336_LANL_scaffold_22582	SRS058336_LANL_scaffold_22582__gene_26581	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKIYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS058336_LANL_scaffold_22582	SRS058336_LANL_scaffold_22582__gene_26582	F080164	MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKLLHYKGQAGQLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS058336_LANL_scaffold_23015	SRS058336_LANL_scaffold_23015__gene_27237	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTINTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKERPHLTE
SRS058336_LANL_scaffold_29856	SRS058336_LANL_scaffold_29856__gene_35790	F046433	MSELSASLDVLDVLNPVTPPDLTLQARDTSRNNPVTYVAEDGYRGTRTSAPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNGLVFLGMSELHFAATALAKRLRHHLEVDNKPVYVDVGNLLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQIKERIAGFEVDNNPGAHKVSVLVMAASSKYIDNGIGADPLWGKATYPVEAYYRLKNDHDDRGMSRVTGIHSSTDRTFGCEVDDIAYLAIDGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLGRE
SRS058336_LANL_scaffold_35531	SRS058336_LANL_scaffold_35531__gene_43194	F094006	MWSALEPAGPTGALYESAVCVEAHIGYLQTGGIACRGLFAFEGSNVLAVAELGAEAPHAINMYDIAVCEPLSELFAKELEYAFNFGA
SRS058336_LANL_scaffold_38412	SRS058336_LANL_scaffold_38412__gene_46944	F077404	NSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
SRS058336_LANL_scaffold_58691	SRS058336_LANL_scaffold_58691__gene_76726	F046432	ELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
SRS058336_LANL_scaffold_60633	SRS058336_LANL_scaffold_60633__gene_80556	F094007	MKLKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS058336_LANL_scaffold_62740	SRS058336_LANL_scaffold_62740__gene_85216	F103432	MKLIHSLFSLSLLLALGGLFCTTACQDDVEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDSRGKVRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWQQPAAGCTKLRFTLTLVDGRSLVAEVPLR
SRS058336_LANL_scaffold_63046	SRS058336_LANL_scaffold_63046__gene_86080	F032313	MACDNNTPQGKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS058336_LANL_scaffold_9334	SRS058336_LANL_scaffold_9334__gene_10001	F072446	MKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER