7000000526: Human stool microbial communities from NIH, USA - visit 1, subject 765560005

Overview

Basic Information

• IMG/M Taxon OID: 7000000526
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053080 | Ga0030527
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765560005
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106752684
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F051210	Metagenome / Metatranscriptome	144	Y
F058555	Metagenome	135	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F077405	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N
F093883	Metagenome	106	N
F097493	Metagenome	104	Y
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1405470	Not Available	707
C1418917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	853
SRS019397_WUGC_scaffold_16975	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	16413
SRS019397_WUGC_scaffold_1859	Not Available	13037
SRS019397_WUGC_scaffold_20172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	31396
SRS019397_WUGC_scaffold_21088	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1987
SRS019397_WUGC_scaffold_23508	Not Available	23832
SRS019397_WUGC_scaffold_24025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	10235
SRS019397_WUGC_scaffold_26838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6894
SRS019397_WUGC_scaffold_26950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5743
SRS019397_WUGC_scaffold_2805	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6498

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1405470	C1405470__gene_127808	F077405	PTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK
C1418917	C1418917__gene_131285	F097493	MKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE
SRS019397_WUGC_scaffold_16975	SRS019397_WUGC_scaffold_16975__gene_49323	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
SRS019397_WUGC_scaffold_1859	SRS019397_WUGC_scaffold_1859__gene_5035	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS019397_WUGC_scaffold_20172	SRS019397_WUGC_scaffold_20172__gene_58112	F051210	MAIVNESKLINEAFSDQKVVDRLIGSSVSNEDARIRMGEYKKLFSRYNDLKEFNENTKMFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDYRSVIPNLGADNFENINSTGRFEADIQVTAETAYDYMIGRKIIPGTLRIKVLKKDGTKFELVDAGQGEFMAKAGVITASQISYANGQVKFTLGTALTPNDDVITVVGAEDVCGTPSNLNGAAPAKNENRFLAKMQQIGLSTVPDMLTAEYNIAALGAMKKATGSDMATFLFNKLRELYTKIINQRLVKTLVNSYVGNTYEVQMQTGIAGYHDYRSSVDFFNAELINIESELASKAVKGVTVTAYIGGMSATNQFQKGASIGKWEKNTKMTYINDLLGWYDGVPVLRSNDVPANDFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMAAGIYYQEGIKSMAPELVQKCTIINA
SRS019397_WUGC_scaffold_21088	SRS019397_WUGC_scaffold_21088__gene_61003	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
SRS019397_WUGC_scaffold_21088	SRS019397_WUGC_scaffold_21088__gene_61005	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNRPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
SRS019397_WUGC_scaffold_23508	SRS019397_WUGC_scaffold_23508__gene_67932	F093883	MEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEDDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE
SRS019397_WUGC_scaffold_23508	SRS019397_WUGC_scaffold_23508__gene_67937	F058555	MKLVYSQQKIKKNIMETKVTLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGYLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG
SRS019397_WUGC_scaffold_24025	SRS019397_WUGC_scaffold_24025__gene_69467	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVRSIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKVVKAIMMEKDDDEDN
SRS019397_WUGC_scaffold_26838	SRS019397_WUGC_scaffold_26838__gene_77699	F106193	LNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVISDREYASRSTAGCMVMLDPLQTMERDVVSIYKQVRTKGGGVGISYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
SRS019397_WUGC_scaffold_26950	SRS019397_WUGC_scaffold_26950__gene_78168	F042095	MAKILYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIDLQNMGQRMTVIPEAIISKTEVYYLKMFNMLDLRDIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLNIASGPPDMWNYFDINTLPFFEVDKINPNITDFAFLDDWKSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAICPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS019397_WUGC_scaffold_2805	SRS019397_WUGC_scaffold_2805__gene_7803	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEESILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK