7000000513: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003

Overview

Basic Information

• IMG/M Taxon OID: 7000000513
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053066 | Ga0031331
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111385965
• Sequencing Scaffolds: 18
• Novel Protein Genes: 18
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → cellular organisms → Bacteria	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F032313	Metagenome	180	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F068942	Metagenome	124	N
F073671	Metagenome	120	N
F085820	Metagenome	111	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2388458	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	514
C2419954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	645
C2450787	All Organisms → cellular organisms → Bacteria	901
C2450981	Not Available	903
C2461647	Not Available	1068
C2461749	Not Available	1070
SRS047824_WUGC_scaffold_11718	Not Available	701
SRS047824_WUGC_scaffold_16316	All Organisms → cellular organisms → Bacteria	20591
SRS047824_WUGC_scaffold_29144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1436
SRS047824_WUGC_scaffold_34965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1763
SRS047824_WUGC_scaffold_47808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	859
SRS047824_WUGC_scaffold_48706	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2085
SRS047824_WUGC_scaffold_53072	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1058
SRS047824_WUGC_scaffold_53433	Not Available	1022
SRS047824_WUGC_scaffold_5440	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2260
SRS047824_WUGC_scaffold_54527	All Organisms → cellular organisms → Bacteria → Proteobacteria	13726
SRS047824_WUGC_scaffold_55012	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3427
SRS047824_WUGC_scaffold_55945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva	13355

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2388458	C2388458__gene_139891	F030786	TKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2419954	C2419954__gene_152308	F094007	MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFVPDVNNYSGEDFTKRNRIIVEICDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVARLAINACEACPLKIDCELYGKLGEAVLSGVLDYKKVRTATSLTKAGKRRPGWDKGCIDNDV
C2450787	C2450787__gene_164603	F045567	MRQRDGRDTLTEKLEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2450981	C2450981__gene_164689	F073671	MNKEQAEHELAELHAQERSLEKALEIVREKIRELVNYTDKNKGQK
C2461647	C2461647__gene_169098	F085820	MRSTFYLFAVLFLATTFFSCETDEPAPRARREIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEI
C2461749	C2461749__gene_169132	F085820	MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKTIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEI
SRS047824_WUGC_scaffold_11718	SRS047824_WUGC_scaffold_11718__gene_16480	F032313	MYRFLILLFAITLMACDNNTPQEKPHEQEKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK
SRS047824_WUGC_scaffold_16316	SRS047824_WUGC_scaffold_16316__gene_22726	F046431	MKRISKIGITIILILSVIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSE
SRS047824_WUGC_scaffold_29144	SRS047824_WUGC_scaffold_29144__gene_40180	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEVQDAYNEALRLFDKWNIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDGSIVHQLKNEFMEYVQFLSASPFCGNLQVALVRCSHNYE
SRS047824_WUGC_scaffold_34965	SRS047824_WUGC_scaffold_34965__gene_48552	F046431	ISITIILILSIIISYGSVIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR
SRS047824_WUGC_scaffold_47808	SRS047824_WUGC_scaffold_47808__gene_69373	F068942	MIRKILSLPTLALCFTLCTALFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAR
SRS047824_WUGC_scaffold_48706	SRS047824_WUGC_scaffold_48706__gene_70963	F046432	MWGMTENELSEIISKYQMPEDRYSVEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEMKS
SRS047824_WUGC_scaffold_53072	SRS047824_WUGC_scaffold_53072__gene_79601	F068942	MIRKILSLPTLALCFTLCTALFAGCNENYIEGFVTKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ
SRS047824_WUGC_scaffold_53433	SRS047824_WUGC_scaffold_53433__gene_80510	F103432	MKLIHSLFSLSLLLALGGLFCTTACQDDVEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDSRGKVRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWQQP
SRS047824_WUGC_scaffold_5440	SRS047824_WUGC_scaffold_5440__gene_7621	F095633	MRNYENFTEIGRGEGLTEGELRTMGALAMKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAAQEMAAHSYEPIPVKINTKRLIATASLDDGGEMSVEERSVPEEVFIDLSRTSCVVDADRSHKSYKFTCPVLEKFPDGELYPIREVYVISAMDVNGSQEVDFKIIYGNLN
SRS047824_WUGC_scaffold_54527	SRS047824_WUGC_scaffold_54527__gene_83413	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIIEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS047824_WUGC_scaffold_55012	SRS047824_WUGC_scaffold_55012__gene_84820	F046432	MQMSESELSEVVSKYQMPEGRYLIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRKIETLEKASDADDEIFKYLFGFYSIFEIKS
SRS047824_WUGC_scaffold_55945	SRS047824_WUGC_scaffold_55945__gene_89737	F092230	MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGIDFINKEIIVRDNAVRVDGIQCLYAVNKNKDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV