7000000511: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712

Overview

Basic Information

• IMG/M Taxon OID: 7000000511
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053064 | Ga0031276
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92402649
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046431	Metagenome	151	Y
F066860	Metagenome	126	N
F077405	Metagenome	117	N
F092230	Metagenome	107	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1234877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	517
SRS018591_WUGC_scaffold_14416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1132
SRS018591_WUGC_scaffold_44471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	2594
SRS018591_WUGC_scaffold_45391	All Organisms → cellular organisms → Bacteria → Proteobacteria	14520
SRS018591_WUGC_scaffold_8683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8367

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1234877	C1234877__gene_120766	F066860	ILIDMTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVAFGIAEDRE
SRS018591_WUGC_scaffold_14416	SRS018591_WUGC_scaffold_14416__gene_28183	F092230	AHKRMVDKLKAHFLKVLLPLFIVCVIFVAFFRQIACGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAITIGYYSYLKPETVYGFYCKLRRKEKYPSDENLVKRIGFLVIILPPCMLFLLIV
SRS018591_WUGC_scaffold_44471	SRS018591_WUGC_scaffold_44471__gene_89617	F077405	LPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQKQKARLK
SRS018591_WUGC_scaffold_45391	SRS018591_WUGC_scaffold_45391__gene_94374	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE
SRS018591_WUGC_scaffold_8683	SRS018591_WUGC_scaffold_8683__gene_17379	F046431	MKKISRISITIILILSIIISYGSVIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR