7000000510: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937

Overview

Basic Information

• IMG/M Taxon OID: 7000000510
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053063 | Ga0031113
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 142498461
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F043990	Metagenome	155	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F090516	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3795965	All Organisms → cellular organisms → Bacteria	788
SRS053917_LANL_scaffold_12104	Not Available	4931
SRS053917_LANL_scaffold_16125	Not Available	6543
SRS053917_LANL_scaffold_23801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2643
SRS053917_LANL_scaffold_30004	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1007
SRS053917_LANL_scaffold_35343	All Organisms → cellular organisms → Bacteria	31543
SRS053917_LANL_scaffold_36328	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3413
SRS053917_LANL_scaffold_38659	Not Available	839
SRS053917_LANL_scaffold_46574	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	567
SRS053917_LANL_scaffold_76790	Not Available	9101
SRS053917_LANL_scaffold_77188	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2724
SRS053917_LANL_scaffold_79877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	665
SRS053917_LANL_scaffold_88277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1249
SRS053917_LANL_scaffold_89257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1115
SRS053917_LANL_scaffold_99591	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	5107

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3795965	C3795965__gene_258023	F047508	GHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS053917_LANL_scaffold_12104	SRS053917_LANL_scaffold_12104__gene_28280	F084362	MNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK
SRS053917_LANL_scaffold_16125	SRS053917_LANL_scaffold_16125__gene_37239	F030786	MKRIRIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNAMGAKKISLADITEGDDSTEGVLKVKYFDDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS053917_LANL_scaffold_23801	SRS053917_LANL_scaffold_23801__gene_54412	F043990	MIKKLGIIFTFGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGERVIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTARKEICIYNQIF
SRS053917_LANL_scaffold_30004	SRS053917_LANL_scaffold_30004__gene_68131	F101358	VQRALVSERFLLSIISWYHKKMTEKHSASLPPRQEHLLTQPITTDGTPEKRTTHSDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYEHLSGGSARQLVGSVAAKASDGELDNSLLVERALKR
SRS053917_LANL_scaffold_35343	SRS053917_LANL_scaffold_35343__gene_79594	F061925	MSWEYSLNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDGIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
SRS053917_LANL_scaffold_36328	SRS053917_LANL_scaffold_36328__gene_81800	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEILQEIKKYK
SRS053917_LANL_scaffold_38659	SRS053917_LANL_scaffold_38659__gene_86785	F055792	ERSTYQEEIDEVDDATERERLHRTSYAFTLSLFVERQSMEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARGVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS053917_LANL_scaffold_46574	SRS053917_LANL_scaffold_46574__gene_103920	F061926	IMMIKTAKHIKTFLASMLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS053917_LANL_scaffold_76790	SRS053917_LANL_scaffold_76790__gene_166713	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS053917_LANL_scaffold_77188	SRS053917_LANL_scaffold_77188__gene_167584	F094006	MWGALELAGPTGVLYESTVCVEAHIGYLQAGGIARRALFAFGGSNLLAVAELGAKAPYAIDMYDIALSKPLSELFAEELEYTFNFGA
SRS053917_LANL_scaffold_79877	SRS053917_LANL_scaffold_79877__gene_173087	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVAALLFEYAYPWRLIFG
SRS053917_LANL_scaffold_88277	SRS053917_LANL_scaffold_88277__gene_190549	F092231	MLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNDNKFAMLGSNKEGNVYNLYLHMAVNEVDDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL
SRS053917_LANL_scaffold_89257	SRS053917_LANL_scaffold_89257__gene_192733	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLVTDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLF
SRS053917_LANL_scaffold_99591	SRS053917_LANL_scaffold_99591__gene_216340	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTS