7000000504: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159611913

Overview

Basic Information

• IMG/M Taxon OID: 7000000504
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053056 | Ga0031266
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159611913
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55485847
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2671870	Not Available	554
C2689454	Not Available	726
C2715250	All Organisms → Viruses → Predicted Viral	1970

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2671870	C2671870__gene_71580	F089054	TSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP
C2689454	C2689454__gene_80150	F073671	MGKEQLERELAGLHEKERSLEKALELVREKIRELVNYTDKNKG
C2715250	C2715250__gene_95763	F067846	MESLQAQWERKTFNDWDKQCSKEDDYNRAVEMEIEAIKEDISNCDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND