7000000496: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000496
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053048 | Ga0031322
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88556398
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F046433	Metagenome	151	N
F076191	Metagenome	118	N
F077404	Metagenome	117	N
F081454	Metagenome	114	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F094006	Metagenome	106	Y
F094007	Metagenome	106	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2693643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	584
C2731929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	925
C2751513	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1606
C2760937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3646
C2763203	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6963
SRS057692_LANL_scaffold_10796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	729
SRS057692_LANL_scaffold_11049	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2816
SRS057692_LANL_scaffold_18244	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	886
SRS057692_LANL_scaffold_19702	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	8266
SRS057692_LANL_scaffold_27373	All Organisms → cellular organisms → Bacteria	11465
SRS057692_LANL_scaffold_31391	All Organisms → cellular organisms → Bacteria	4740
SRS057692_LANL_scaffold_31915	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	28617
SRS057692_LANL_scaffold_43061	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	657
SRS057692_LANL_scaffold_58187	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2962

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2693643	C2693643__gene_134741	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLVDGTEVSFYKGRNLIYSDILFSGGVRTILFKCRQKKNLTRFISRVLELSQGKPENIHPDFRA
C2731929	C2731929__gene_148293	F046433	SPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRAKNKMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGED
C2751513	C2751513__gene_154803	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVITMVYEYNK
C2760937	C2760937__gene_157810	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLAAFLLALVVQKIRALFGGITASVFVIMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYNRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
C2763203	C2763203__gene_158752	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEKNNHHYNNPTTCVRSAHDNRELKDVIHLLILAGGNEIPSNHYGFLRNA
SRS057692_LANL_scaffold_10796	SRS057692_LANL_scaffold_10796__gene_12283	F089055	PECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYGKSLDYINNSPLEAVQAIGNSLQRLREYKTERSCR
SRS057692_LANL_scaffold_11049	SRS057692_LANL_scaffold_11049__gene_12631	F046433	MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE
SRS057692_LANL_scaffold_18244	SRS057692_LANL_scaffold_18244__gene_21111	F094007	VKSRGVFCGVDYLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKRRSGWNKGCIDNNA
SRS057692_LANL_scaffold_19702	SRS057692_LANL_scaffold_19702__gene_23224	F077404	MNILKTAFAFFFALCFMMMGANSYAQTTDRINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYTPFTENNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR
SRS057692_LANL_scaffold_27373	SRS057692_LANL_scaffold_27373__gene_33531	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDKVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
SRS057692_LANL_scaffold_31391	SRS057692_LANL_scaffold_31391__gene_39139	F041827	HFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK
SRS057692_LANL_scaffold_31915	SRS057692_LANL_scaffold_31915__gene_39858	F089057	MTNLIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSNDIYIKIFGNVLTFINMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM
SRS057692_LANL_scaffold_43061	SRS057692_LANL_scaffold_43061__gene_55870	F094006	SRARVAAMRGALEPADPTGTLYESVVSVEAYIGELQAGGISRRDLFALGWSNVLAVAELGAEASHAIDMYDIAVCEPLSELFTEELEYAFNFSA
SRS057692_LANL_scaffold_58187	SRS057692_LANL_scaffold_58187__gene_82116	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKT