7000000488: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000488
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053040 | Ga0031263
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35857335
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067846	Metagenome	125	Y
F073671	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS016529_Baylor_scaffold_28144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	3084
SRS016529_Baylor_scaffold_4770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	4443

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS016529_Baylor_scaffold_28144	SRS016529_Baylor_scaffold_28144__gene_29748	F067846	MSIIAEWERQEFNKWDKQCGKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
SRS016529_Baylor_scaffold_4770	SRS016529_Baylor_scaffold_4770__gene_4986	F073671	MEKETEHELAELHEKERSLEKTLELVREKIRELVNYTNKNKGQK