7000000480: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897

Overview

Basic Information

• IMG/M Taxon OID: 7000000480
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053031 | Ga0031246
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99907249
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F077405	Metagenome	117	N
F094007	Metagenome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS015209_WUGC_scaffold_21572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1529
SRS015209_WUGC_scaffold_53194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	974
SRS015209_WUGC_scaffold_54351	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2861

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS015209_WUGC_scaffold_21572	SRS015209_WUGC_scaffold_21572__gene_43036	F077405	ALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQK
SRS015209_WUGC_scaffold_53194	SRS015209_WUGC_scaffold_53194__gene_105548	F046433	QAQDASRDNLMVYVKADNYMGTETSDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELVFLGMSELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFGVDNDPESHEASVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDNNDWGVSRVTGIHSSTDSAFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLDKG
SRS015209_WUGC_scaffold_54351	SRS015209_WUGC_scaffold_54351__gene_108470	F094007	MELKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA