7000000472: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750

Overview

Basic Information

• IMG/M Taxon OID: 7000000472
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053023 | Ga0031066
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95577291
• Sequencing Scaffolds: 25
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F053097	Metagenome / Metatranscriptome	141	Y
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F081454	Metagenome	114	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F089055	Metagenome	109	Y
F097490	Metagenome	104	N
F101358	Metagenome	102	Y
F103430	Metagenome	101	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3417696	Not Available	543
C3422890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	560
C3447388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	669
C3456934	Not Available	732
C3466658	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	814
C3471322	Not Available	864
C3482810	Not Available	1038
C3505733	Not Available	2655
C3506927	All Organisms → Viruses → Predicted Viral	3162
C3507795	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	3805
SRS051244_LANL_scaffold_12138	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	12217
SRS051244_LANL_scaffold_18022	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	27530
SRS051244_LANL_scaffold_25572	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7986
SRS051244_LANL_scaffold_30728	All Organisms → cellular organisms → Bacteria	2131
SRS051244_LANL_scaffold_32352	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1253
SRS051244_LANL_scaffold_33072	All Organisms → cellular organisms → Bacteria	2592
SRS051244_LANL_scaffold_36288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	1635
SRS051244_LANL_scaffold_46583	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4687
SRS051244_LANL_scaffold_48329	All Organisms → cellular organisms → Bacteria	10189
SRS051244_LANL_scaffold_50252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2270
SRS051244_LANL_scaffold_52257	All Organisms → cellular organisms → Bacteria	698
SRS051244_LANL_scaffold_54370	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1279
SRS051244_LANL_scaffold_5541	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1717
SRS051244_LANL_scaffold_58051	Not Available	3442
SRS051244_LANL_scaffold_9756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2875

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3417696	C3417696__gene_144566	F070224	LLASPLRPVKTRGSKIRTRDWVKVDYSYQNNIIIMGFGDSLVIENRFAYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRTPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYHHPEACIIH
C3422890	C3422890__gene_146896	F103431	MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFFHAERGNAAAAAFDGAFGENIADCHTEDDNDKNTESKEEGFHVCIPRG
C3447388	C3447388__gene_157906	F089055	VENMNITPECVNETPEIEAREKLAAIFSDAERRDNNFKVNPELGKTAIDIENTSRMNSADNGAVDLCSQALGSYGKSLDYINNSTLETVQAIGNLLQLFREDKTKESCK
C3456934	C3456934__gene_162391	F103430	MKLITIKAFIGSDNQTKQLNVDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMNTLGELKEVLNQEAIAYQIENDLQLI
C3466658	C3466658__gene_166899	F076191	MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPATYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGVLRDA
C3471322	C3471322__gene_169142	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
C3482810	C3482810__gene_174995	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
C3505733	C3505733__gene_189016	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECACYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
C3506927	C3506927__gene_190145	F053097	MFDIQGSKIKLSTDDLAIPPFKDYYNKAKDKSEALKEIEYVIWLYKWNTPYEAYPEKQRASVVAKDIFKDDKYIPSP
C3507795	C3507795__gene_190982	F077403	MDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM
SRS051244_LANL_scaffold_12138	SRS051244_LANL_scaffold_12138__gene_9414	F045567	MRQRDGRDTLTEELEGGITPLLYRTEGEARRPWVRMVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS051244_LANL_scaffold_18022	SRS051244_LANL_scaffold_18022__gene_14764	F043235	VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLTHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS051244_LANL_scaffold_25572	SRS051244_LANL_scaffold_25572__gene_22437	F053092	MQSDQGLILGLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS051244_LANL_scaffold_30728	SRS051244_LANL_scaffold_30728__gene_28187	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILNLRRQRHERHVILRVFINGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP
SRS051244_LANL_scaffold_32352	SRS051244_LANL_scaffold_32352__gene_30019	F059076	TRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE
SRS051244_LANL_scaffold_33072	SRS051244_LANL_scaffold_33072__gene_30840	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFNLIFGKKDYQQTAKQRILQRK
SRS051244_LANL_scaffold_36288	SRS051244_LANL_scaffold_36288__gene_34572	F063778	MPETISEGAQQKLLQQLQDTLGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLEPPPED
SRS051244_LANL_scaffold_46583	SRS051244_LANL_scaffold_46583__gene_47544	F084342	LGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIH
SRS051244_LANL_scaffold_48329	SRS051244_LANL_scaffold_48329__gene_49860	F101358	MTEKYSASLPPRQPEHLLTQPITTDGTPKERTTHPDTYIIPKHENVPQYLWNVLRSSGQLDERWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVPLAVLQEQNLDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR
SRS051244_LANL_scaffold_50252	SRS051244_LANL_scaffold_50252__gene_52532	F081454	MKAFKLVLLLFITSASLVFGQEKKYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEAKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK
SRS051244_LANL_scaffold_52257	SRS051244_LANL_scaffold_52257__gene_55520	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE
SRS051244_LANL_scaffold_54370	SRS051244_LANL_scaffold_54370__gene_58817	F018385	TETMMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK
SRS051244_LANL_scaffold_5541	SRS051244_LANL_scaffold_5541__gene_3794	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK
SRS051244_LANL_scaffold_58051	SRS051244_LANL_scaffold_58051__gene_65321	F084362	MNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRDVDVAVKINNKPAGSLKDDKQSETEAEQKGFWWEK
SRS051244_LANL_scaffold_9756	SRS051244_LANL_scaffold_9756__gene_7375	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM