7000000461: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005

Overview

Basic Information

• IMG/M Taxon OID: 7000000461
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053012 | Ga0031346
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48470086
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043235	Metagenome	156	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095633	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103432	Metagenome	101	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2865620	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	555
C2887862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	856
C2889186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	895
C2896750	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1302
SRS045127_LANL_scaffold_10093	All Organisms → Viruses → Predicted Viral	3612
SRS045127_LANL_scaffold_12994	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	88994
SRS045127_LANL_scaffold_14630	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	8202
SRS045127_LANL_scaffold_19110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	40238
SRS045127_LANL_scaffold_23478	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1635
SRS045127_LANL_scaffold_29811	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	750
SRS045127_LANL_scaffold_31187	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	17849
SRS045127_LANL_scaffold_32184	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	694
SRS045127_LANL_scaffold_3695	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	75325
SRS045127_LANL_scaffold_37032	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	664
SRS045127_LANL_scaffold_38229	All Organisms → cellular organisms → Bacteria	15892
SRS045127_LANL_scaffold_4892	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	21246

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2865620	C2865620__gene_84915	F081456	FEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAMTVILYTISAE
C2887862	C2887862__gene_93053	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDKE
C2889186	C2889186__gene_93633	F067846	MSIIADWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKEDIANGDDDAICAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
C2896750	C2896750__gene_96533	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS045127_LANL_scaffold_10093	SRS045127_LANL_scaffold_10093__gene_10298	F067846	MESLQAQWERKTFNDWDKQCSKEDDYNRAIEMEIESIKEDIANNDSDAICAFSEKMFDDDEFLKAVALGTDYEEMRIKILKSLAEERIEQRRKDYEKGFILND
SRS045127_LANL_scaffold_12994	SRS045127_LANL_scaffold_12994__gene_13531	F103435	MKFVFCTEPIYQYYRACVYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPDFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEGKSTVEPLRVWYPFDMNSYTNALE
SRS045127_LANL_scaffold_12994	SRS045127_LANL_scaffold_12994__gene_13540	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLISDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM
SRS045127_LANL_scaffold_12994	SRS045127_LANL_scaffold_12994__gene_13577	F099452	MGKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYKDIINLDDVSLLTDLRKTDWYEKWFTDDSNNANLIDLSRFNFKTLARFEKEEYLRNVEGYDFEAVTQVDGYSLFDTLIEDKDVELFKLAAENILISHGFFDNTDYNFYDIPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR
SRS045127_LANL_scaffold_14630	SRS045127_LANL_scaffold_14630__gene_15510	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS045127_LANL_scaffold_19110	SRS045127_LANL_scaffold_19110__gene_20860	F105379	MVIHFPLNQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLSKITQLEPSGDNPEIAIHKPVVSVFNWDTEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY
SRS045127_LANL_scaffold_19110	SRS045127_LANL_scaffold_19110__gene_20880	F092232	MNSQSKFIAEYNDRNRPKFNDRFFCKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYAEVQKLLIGEETPSISIKDSDLKLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFVDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDENFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPDAVAFDAQLLGQTIAMVARTREFETQLRPALINMEDSCSIYFEEA
SRS045127_LANL_scaffold_23478	SRS045127_LANL_scaffold_23478__gene_26455	F081510	MKLPKINTKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKVDTPMNQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQMHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS045127_LANL_scaffold_29811	SRS045127_LANL_scaffold_29811__gene_34772	F018385	MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDSKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEE
SRS045127_LANL_scaffold_31187	SRS045127_LANL_scaffold_31187__gene_36588	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS045127_LANL_scaffold_32184	SRS045127_LANL_scaffold_32184__gene_37924	F095633	MGNYENSTEVGRGEGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGSVPFGSWDEFAKAVQEMAAHKMTAYSYEPIPVKINTKRLIAIAFLDDRGEMSVEEHSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLKRYPDGELYPIREAYVISAIDVNGSQEVDF
SRS045127_LANL_scaffold_3695	SRS045127_LANL_scaffold_3695__gene_3404	F092229	MNKEYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFRSTIEELDLATVLQKVTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQAYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRHNPSGYVLDSNLELVKG
SRS045127_LANL_scaffold_3695	SRS045127_LANL_scaffold_3695__gene_3426	F099453	MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVSGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYRFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIHYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYMIEYMEYGNSKLVIKITQGA
SRS045127_LANL_scaffold_3695	SRS045127_LANL_scaffold_3695__gene_3428	F080166	MEVTFNSILKRLGNDVKENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS
SRS045127_LANL_scaffold_3695	SRS045127_LANL_scaffold_3695__gene_3429	F081455	MDLLKHLNETKLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEWILGNYVDYDSFNKIKESNADIIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLRYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKK
SRS045127_LANL_scaffold_37032	SRS045127_LANL_scaffold_37032__gene_45094	F090517	TLEYKSAKYGPYFVYLSFVSDSIVEVSTFATTDLTVAYDSKDLCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPAAEVTLTLRKKL
SRS045127_LANL_scaffold_38229	SRS045127_LANL_scaffold_38229__gene_47220	F068942	MIRKILSLPTLALCFTLGSTFFAGCNEDYIKNTDIKVRWSNVKNPKYGDAINITLKAEGETFTTVGDYSWISFRSDVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQPKQFEFSVSTIPPSLYIFKVRQPALPAKAQ
SRS045127_LANL_scaffold_4892	SRS045127_LANL_scaffold_4892__gene_4675	F105380	MPILELDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK