7000000438: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000438
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052988 | Ga0027927
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35046266
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F089056	Metagenome	109	N
F094006	Metagenome	106	Y
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1196901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	516
C1210741	All Organisms → cellular organisms → Bacteria	673
C1216971	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	802
C1221295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	948
C1223597	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1064
SRS013945_WUGC_scaffold_14087	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	965
SRS013945_WUGC_scaffold_7418	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1121
SRS013945_WUGC_scaffold_9852	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1196901	C1196901__gene_52787	F043235	KRISVVDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPKGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFHVREALAIIVEG
C1200061	C1200061__gene_53943	F099454	MKASKLLWAVIMALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGILDSKSDTYLTKKVDTLSNGDFRISYDWVSFTVREKKSVIDVEVQKNE
C1210741	C1210741__gene_57906	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNTYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE
C1216971	C1216971__gene_60240	F094006	LSRARVAAMRGALEPADPTGALYESVVSVEAHIGELQAGGIACRSLFAFGGSNLLAVAELGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNFSA
C1221295	C1221295__gene_61743	F045567	GSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR
C1223597	C1223597__gene_62589	F061927	MKNPIFILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK
SRS013945_WUGC_scaffold_14087	SRS013945_WUGC_scaffold_14087__gene_16745	F059076	LKFTLMTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS013945_WUGC_scaffold_7418	SRS013945_WUGC_scaffold_7418__gene_7222	F043990	MIKKLGIIFIFGVIILGIVVYADHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGKKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRNFGILIVDTTRKEICIYNQIF
SRS013945_WUGC_scaffold_9852	SRS013945_WUGC_scaffold_9852__gene_10756	F089056	MNIFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ