7000000430: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 7000000430
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052980 | Ga0027942
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18115405
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F054109	Metagenome	140	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C851955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3565
SRS015799_WUGC_scaffold_10744	All Organisms → cellular organisms → Bacteria	32308
SRS015799_WUGC_scaffold_1220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1053
SRS015799_WUGC_scaffold_8013	All Organisms → Viruses → Predicted Viral	3629

Sequences

Scaffold ID	Protein ID	Family	Sequence
C851955	C851955__gene_34229	F103436	MIVTSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGGRRYVAAVDLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
SRS015799_WUGC_scaffold_10744	SRS015799_WUGC_scaffold_10744__gene_15094	F054109	MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQVMAEKLDISLSSYINKAVLEKLAHDEKSEA
SRS015799_WUGC_scaffold_1220	SRS015799_WUGC_scaffold_1220__gene_1260	F077405	LPTELFPRLLVAKQRGVFYGFISWCQIKFVKKFFD
SRS015799_WUGC_scaffold_8013	SRS015799_WUGC_scaffold_8013__gene_9944	F027205	VASRLIVSADDILKAVEESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS015799_WUGC_scaffold_8013	SRS015799_WUGC_scaffold_8013__gene_9945	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWSAREGKPAPFFYEARQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015799_WUGC_scaffold_8013	SRS015799_WUGC_scaffold_8013__gene_9946	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYGSGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTIDKCPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQFWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID