7000000411: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 638754422

Overview

Basic Information

• IMG/M Taxon OID: 7000000411
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052959 | Ga0031112
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 638754422
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130532914
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F053092	Metagenome	141	N
F059076	Metagenome	134	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3964858	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	556
C3968566	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	569
C3972192	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	582
C3989888	Not Available	655
C4008986	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	768
C4029252	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	969
C4074953	Not Available	13663
SRS042984_LANL_scaffold_13487	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	20120
SRS042984_LANL_scaffold_1489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	641
SRS042984_LANL_scaffold_2571	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	700
SRS042984_LANL_scaffold_2787	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	22421
SRS042984_LANL_scaffold_30139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	8252
SRS042984_LANL_scaffold_40224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	694
SRS042984_LANL_scaffold_45497	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1913
SRS042984_LANL_scaffold_64108	All Organisms → cellular organisms → Bacteria	12662
SRS042984_LANL_scaffold_71861	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	529
SRS042984_LANL_scaffold_72136	Not Available	5669
SRS042984_LANL_scaffold_73575	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42777
SRS042984_LANL_scaffold_83237	All Organisms → cellular organisms → Bacteria	4458
SRS042984_LANL_scaffold_84674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	36497
SRS042984_LANL_scaffold_86229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11597

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3964858	C3964858__gene_187801	F097490	KEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3968566	C3968566__gene_189080	F043990	FGVIILGIVVYADHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYIGDENDDRDFGILIVDTTRKEICIYYQIL
C3972192	C3972192__gene_190346	F097490	KEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSKMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKTIKYKYNNKEEYKIDKFYTDFPYNSFSNSKEKKKMHFMLKKKLDSSNIIKGYEFYNKDIETRTIKM
C3989888	C3989888__gene_196433	F022002	RRLTKETTKNKMNIYSPSSRSMSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
C4008986	C4008986__gene_203211	F059076	TRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPRAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
C4029252	C4029252__gene_210430	F066860	MTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTED
C4074953	C4074953__gene_228670	F084362	MNCTFTVRWSDEKNKPHAKTYATEPAAKKAKKWLLEHGIRNVDIAVKINNKPAGSLKDDKPPETEAEQKGFWWEK
SRS042984_LANL_scaffold_13487	SRS042984_LANL_scaffold_13487__gene_17997	F084342	LGGYLAIPIRRPFFAQTLKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS042984_LANL_scaffold_1489	SRS042984_LANL_scaffold_1489__gene_1871	F103431	MIDLDALVVRMLFFIQLFLQGIAWRVAIAHFLHAERRNAAAAAFDGAFGENIADCHAEDDNDKNTESQKEGFHVCIPRG
SRS042984_LANL_scaffold_2571	SRS042984_LANL_scaffold_2571__gene_3237	F089056	VFLKTQKMNKKMNVFCKIILPLLCIISCSERKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFRKGIQ
SRS042984_LANL_scaffold_2787	SRS042984_LANL_scaffold_2787__gene_3585	F077403	MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGSALPDRYEGYQLYQGLVRGDSIWIEM
SRS042984_LANL_scaffold_30139	SRS042984_LANL_scaffold_30139__gene_39509	F053092	MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS042984_LANL_scaffold_40224	SRS042984_LANL_scaffold_40224__gene_52249	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSTASGFSSYFKLFEYGIIILICAGMITYVYMFLKNNQILTLKMLIIALAAALLFEYAYPWRLIFG
SRS042984_LANL_scaffold_45497	SRS042984_LANL_scaffold_45497__gene_58819	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSNLEGLTRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK
SRS042984_LANL_scaffold_64108	SRS042984_LANL_scaffold_64108__gene_83656	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVDLHNPAAPNIYNEALRAFDKYAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMAYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVTQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKENKRIASQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDAHIKQMIAAIQLDVYDI
SRS042984_LANL_scaffold_71861	SRS042984_LANL_scaffold_71861__gene_93743	F101359	KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQRQSFTDSYKETVK
SRS042984_LANL_scaffold_72136	SRS042984_LANL_scaffold_72136__gene_94159	F022002	LALTLGLLLALLLSLPSYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESE
SRS042984_LANL_scaffold_73575	SRS042984_LANL_scaffold_73575__gene_96130	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQTN
SRS042984_LANL_scaffold_83237	SRS042984_LANL_scaffold_83237__gene_113143	F085821	MNNVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASIQKKLHHDLLNLWYESTKRQILEQDKGKHDEVYIDAWVKANVNKTLSIIRSGETIASCKEDVVELAESLNDEYEQNISLLDEY
SRS042984_LANL_scaffold_84674	SRS042984_LANL_scaffold_84674__gene_116359	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS042984_LANL_scaffold_86229	SRS042984_LANL_scaffold_86229__gene_120538	F040149	VADEGAKEFRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETEVVQLLNIHRMF